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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGACCAAATTGATAGACCTTTTGAACGGCTCTGATTATGTACCCACTTATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccccctcttcattcccttatttccctttttctttctttagtttatcattcccttatactactctttttcacaatttcacag

Basic information

species Glycine max
transcript GLYMA10G30440.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30440.3 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os12g40890.1 (Oryza sativa), 5'ss of exon 3
ATGAGACCAAATTGATAGACCTTTTGAACGGCTCTGATTATGTACCCACTTATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccccct-cttcattcccttatttccctttttct--ttctttagtttatcattcccttatactactctttttcacaatttcacag-----------------------------------------------------------------
| |||| |||  |    || ||  | ||||||||||| ||||| || || ||  | ||||||||||| ||||||||||||||||| ||||| || |||||||||||   | || ||| | |    ||||  |   | |||   | |||| |||      ||   ||     |  |  ||  ||| ||  |                                                                  
ACGAGAGCAAGATTGCTGATCTGCTCAACGGCTCTGAATATGTGCCAACCTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCATGGGAgtcagtaatctctacttaaattttctattatctaatatctaagtgtttaattttaataacctgaattaaggtactagtctgaatctctgatatgagtccatgctctgcatctgtgttctgaattctgaccattttgtttggaaatggaaatttcag

upper sequence: GLYMA10G30440.3 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g43400.1 (Oryza sativa), 5'ss of exon 3
-ATGAGACCAAATTGATAGACCTTTTGAACGGCTCTGATTATGTACCCACTTATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccccc-tcttcattcccttatttccctttttctttctttagtttatcattcccttatactactctttttcacaatttcacag--------------
      |  | |   |||  | |     | | |   || || || || || ||  | ||||||||||| ||||||||||||||||| ||||| || ||||||| ||   | || ||   ||   | || | ||  || |  |  || |   |  |  ||   ||  |||     |   |    |  |  |              
AGCTGAAGGAGAGCAATAAGC-TGAGAGATGACCTGGAGTACGTGCCGACGTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCGTGGGAgtaagcctcgccgtcgcgataagcataatcccagttctaataattaa---tccccatcagctaagctagcagatcggatggatcgatcgagtaactgatcaac

upper sequence: GLYMA10G30440.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G138268_T01 (Zea mays), 5'ss of exon 3
ATGAGACCAAATTGATAGACCTTTTGAACGGCTCTGATTATGTACCCACTTATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccccctcttcattcccttatttccctttttctttctttagtttatcattcccttat-----actactctttttcacaatttcacag----
| |||| |||  || | || ||  | |||||||| || || || || || ||  | ||||||||||| ||||||||||||||||| || ||||| ||||||| ||  |  | |   ||| | ||| || |     |    || ||| | ||| ||| ||| ||     | || |  |  |  | ||||||       
ACGAGAGCAAGCTGGTGGATCTGCTCAACGGCTCCGAGTACGTGCCGACCTACGAGGACAAGGACGGGGACTGGATGCTCGTCGGCGATGTGCCGTGGGAgtgagcactgcatg--catgcgcttcttcctgcactatactccttattatattattgcctaatcggaaaataataataatttccatttcattttcag

upper sequence: GLYMA10G30440.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0081g00010.t01 (Vitis vinifera), 5'ss of exon 3
ATGAGACCAAATTGATAGACCTTTTGAACGGCTCTGATTATGTACCCACTTATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccccctctt-----cattcccttatttcccttttt-------ctttctttagtttatcattcccttatactact-----ctttttcacaatttca--cag
|||||| ||||||||| || ||||||||||| || ||||| || || |||||| ||||||| || |||||||||||||| || || |||||||| ||||||| |||| |  |  ||      |||  |  ||||   || ||       ||| | | | || |||  |   || ||||| |     ||| ||   ||||| |  |||
ATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaatttgaatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722268|gb|BW651258.1|BW651258
EST:     TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGA                         AATGTTCGTTGAATCATGCCAGCGCC
genomic: TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccc ... aatttcacagAATGTTCGTTGAATCATGCCAGCGCC
EST: gi|5606447|gb|AI900481.1|AI900481
EST:     TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGAGA                         AATGTTCGCTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC
genomic: TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccc ... aatttcacagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC
EST: gi|10843606|gb|BF066882.1|BF066882
EST:     TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGCGA                         AATGTTCGTTGAATCATGCCAGCGCCTTCGCATATTGAA
genomic: TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccc ... aatttcacagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAA
EST: gi|22524540|gb|BU083351.1|BU083351
EST:     TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGNGA                         AATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC
genomic: TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccc ... aatttcacagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC
EST: gi|10708992|gb|BF008777.1|BF008777
EST:     TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGA                         AATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC
genomic: TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccc ... aatttcacagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC
EST: gi|8402213|gb|BE057847.1|BE057847
EST:     TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGAGA                         AATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC
genomic: TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccc ... aatttcacagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC