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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACGAGTCAGAAAGAAGGAGCAGTCACTGGTGGCCCGGCTTTTGTCGAAGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaagtttgtattatttataagagtttaattgtcatgcacaataccaaaaattttataatatactattggattagaaatctatcttttaaagca...

Basic information

species Glycine max
transcript GLYMA10G29810.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G29810.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G54780.1 (Arabidopsis thaliana), 5'ss of exon 2
GTCACGAGTCAGAAAGAAGGAGCAGTCACTGGTGGCCCGGCTTTTGTCGAAGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaagtttgtattattta-taagagtttaattgtcatgcacaataccaaaa-attttataatatactattggattagaaatctatcttttaaagca
 | || |||||||| ||||||||  | |||||||| || |||||| | |||||||| || ||||| || ||||||||||||||||| || || || || ||||        ||  | |  |||| ||    | || |   | |    |||    |   ||  | || |   | |    |  | ||| |||    ||      
ATAACAAGTCAGAAGGAAGGAGCTATTACTGGTGGTCCTGCTTTTATTGAAGCTGTTGGTGAAAACATTCTTGATGCTACCGTCTCCGAAAATCTTCCCGgtatggttctattactctagtttagtatatatatagtgtacttttggaattttgatgcatcatctagtgcccaagacaaaaacaaaactagaggtttggt--

upper sequence: GLYMA10G29810.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0128g00050.t01 (Vitis vinifera), 5'ss of exon 2
GTCACGAGTCAGAAAGAAGGAGCAGTCACTGGTGGCCCGGCTTTTGTCGAAGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaagtttgtatta--tttataagagtttaattgtcatgc-acaatacca--aaaattttataatatactattggattagaaatctatcttttaaagca
||||| ||||| |||||||||||||||||||||||||| || |||||| | ||||| || || |  || ||||||||||| || ||||||||||| || ||||     |  |||   ||   ||  ||| | | |   |||| ||      || ||  ||||  ||  |   |  ||     |||   |      ||  |||  |
GTCACCAGTCAAAAAGAAGGAGCAGTCACTGGTGGCCCTGCCTTTGTCCAGGCTGTTGGTGATACCATTCTTGATGCTACAGTATCAGAGAACCTTCCGGgtataaaaacatttcctttcacttcttaaaattctggctgtcttgttgttttatcatcaaaagcttgaatggttttaacactttaaggaa-----ttccaaaaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295336|gb|FG985990.1|FG985990
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAG                         TATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|151394065|gb|EV263936.1|EV263936
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAG                         TATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|20498085|gb|BQ273015.1|BQ273015
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAG                         TATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|13312736|gb|BG406387.1|BG406387
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAG                         TATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|16283740|gb|BI945712.1|BI945712
EST:     AGAGAACCTCCCAG                         TATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGAGAACCTCCCAGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|209726122|gb|BW675297.1|BW675297
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAG                         TATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|207819086|gb|GD793220.1|GD793220
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAG                         TATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|192321485|gb|FK011757.1|FK011757
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTTTCAGAGAACCTCCCAG                         TATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|151406399|gb|EV276214.1|EV276214
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAG                         TATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|22928578|gb|BU545717.1|BU545717
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAG                         TANNNGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|151393222|gb|EV263097.1|EV263097
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAG                         TATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|31469567|gb|CD411595.1|CD411595
EST:     AGCTGTGGGGGTAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAG                         TATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|105634314|gb|DW247463.1|DW247463
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAG                         TATTGGCTACGGATGAGAAG
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAG
EST: gi|192294333|gb|FG987262.1|FG987262
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAG                         TATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTCCCAGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC