Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAGTTGGCCGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgcccgtgttctgttctggaatcttctatttttcttattttacccctttggaattgaatattggaagtttttgttttgtttttttttttttggttattttgtattaatag

Basic information

species Glycine max
transcript GLYMA10G26790.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G26790.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 2
AGAGAGTTGGCCGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgcccgtgttctgttctggaatcttctatttttcttattttacccctttggaattgaatattggaagtttttgttttgtttttttttttttggttattttgtattaatag
|||||| |||||||||| || ||||| || || || |||||||||||||| |||||||| |||||||| || ||||||||  | || ||    ||||| |||                 | |       |||  ||| |||||   ||  |  ||  || |||    ||||   | |   | |  ||||||  ||||||| | ||| |         
AGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgt-----------------gattcaatggctttgattattcttgagttcgcgtttcagatttg----ttggttttctgactctccttttttgctttttggct-tttag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990319|gb|BI315992.1|BI315992
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|298187775|gb|HO031732.1|HO031732
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|213607333|gb|DB967070.1|DB967070
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|21994938|gb|BQ786466.1|BQ786466
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|7041681|gb|AW471522.1|AW471522
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|6566521|gb|AW234164.1|AW234164
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|298193606|gb|HO040254.1|HO040254
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|4313367|gb|AI460486.1|AI460486
EST:     ATGCGCACCGAAATCATAATTAGAGCCACCAGAAACCCA-GCTGTTCTCG                         GTGAGAAGGGAAGGAGAA
genomic: ATGCGCACCGAAATCATAATTAGAGCCACCAGAA-CCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAA
EST: gi|213601492|gb|DB956742.1|DB956742
EST:     GATGCGCACCGAAATCGTAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|209716015|gb|BW662266.1|BW662266
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|209717515|gb|BW653955.1|BW653955
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|192299860|gb|FG993350.1|FG993350
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|151398090|gb|EV267968.1|EV267968
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|15203305|gb|BI426073.1|BI426073
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|42722910|gb|CK768809.1|CK768809
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|209711928|gb|BW679007.1|BW679007
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|6725979|gb|AW310378.1|AW310378
EST:     CCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: CCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|213597996|gb|DB972184.1|DB972184
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|42722882|gb|CK768781.1|CK768781
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|16996025|gb|BM085397.1|BM085397
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|27427516|gb|CA939036.1|CA939036
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|298184418|gb|HO029631.1|HO029631
EST:     GATGTGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|19269579|gb|BM885835.1|BM885835
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGTTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|21601379|gb|BQ611710.1|BQ611710
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|120530330|gb|EH258463.1|EH258463
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|213617025|gb|DB959337.1|DB959337
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|27424060|gb|CA935580.1|CA935580
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|12773588|gb|BG238515.1|BG238515
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|151406970|gb|EV276785.1|EV276785
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|24135989|gb|BU926499.1|BU926499
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|192324283|gb|FK018259.1|FK018259
EST:     GATACGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|6502154|gb|AW203527.1|AW203527
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|209718917|gb|BW669106.1|BW669106
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAACGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|298166628|gb|HO010067.1|HO010067
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|16996729|gb|BM086101.1|BM086101
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|213603280|gb|DB970389.1|DB970389
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|193309818|gb|FK274988.1|FK274988
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|10709986|gb|BF009710.1|BF009710
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|298178210|gb|HO023945.1|HO023945
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: gi|209729681|gb|BW669781.1|BW669781
EST:     GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG                         GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGAGTTGGCCGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgcccgtgttctgttctggaatcttctatttttcttattttacccctttggaattgaatattggaagtttttgttttgtttttttttttttggttattttgtattaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT