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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGAATCATTAGGTATAGTTGTTGGTATTGTGTTCTTGGTTGTGGCAATCTTGTTTCAGTATTTTAACTTCACATCAGATTCAAATgtaagttatgagtatggtaaatctgagtatttgttttgactctaatatcttggaactgatatcaatagaagaaaggagcattgttatgaattatttttggttttgcag

Basic information

species Glycine max
transcript GLYMA10G16320.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G16320.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G41490.1 (Arabidopsis thaliana), 5'ss of exon 2
GCCTGAATCATTAGGTATAGTTGTTGGTATTGTGTTCTTGGTTGTGGCAATCTTGTTTCAGTATTTTAACTTCACATCAGATTCAAATgtaagt-tatgagtatggtaaatctgagtatttgttttgactctaatatcttggaactgatatcaatagaagaaaggagcattgttatgaattatttttggttttgcag
||| || ||||| ||||| |||||||||||||| || ||| | ||||| ||  | ||||||||||||||||||||   |||||| ||||||||| |      | |     | | | || |   | ||  | |    |||    |   || |   |               |  | || |                  
GCCAGAGTCATTGGGTATTGTTGTTGGTATTGTCTTTTTGATCGTGGCGATAATATTTCAGTATTTTAACTTCACTGAAGATTCTAATgtaagtgtgcattaacgtcttgttttattaatctctgtggttat----tctcattatcaatgtttgtgagtctggctgatgattctgtgcag-----------------

upper sequence: GLYMA10G16320.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g05920.t01 (Vitis vinifera), 5'ss of exon 2
GCCTGAATCATTAGGTATAGTTGTTGGTATTGTGTTCTTGGTTGTGGCAATCTTGTTTCAGTATTTTAACTTCACATCAGATTCAAATgtaagttatgagtatggtaaa---tctgagtatttgttttgactctaatatcttggaactgatatcaatagaagaaaggagcattgttatgaattatttttggttttgcag
|||||||||| | ||||| |||||||| ||||| ||||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||     || |  ||||   |   ||    || |||   |  | |   ||  |  | |  |  |      ||| |  ||     |||||||  || ||         
GCCTGAATCACTGGGTATTGTTGTTGGGATTGTCTTCTTGGTCTTGGCAATCTTATTTCAGTATTTTAATTTCACATCAGATTCAAATgtaagtgtattgtcttataaaattttccagctcatggtttattttaattgcttttcagttcaattttagtttttaaaaggtca--accatgaatt--ttctgac-------