Sequence
atgc intronic sequence ATGC exonic sequenceGCCGGTGTCGAAGAATCTGTACCGGCGGATGAACAGGGTGGTGGCGGAGCTGCTCTGGCTGGAGCTCGTGTGGATTATTGATTGGTGGGCCGGTGTTAAGgtttaatttctcttgtcttagttaatgttgttgatttgagttattgttctcctctagtgcaaggtggtgtttattttttagttgttttgtgctttgcttg...
Basic information
species | Glycine max |
transcript | GLYMA10G12560.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G12560.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g41900.1 (Oryza sativa), 5'ss of exon 2
GCCGGTGTCGAAGAATCTGTACCGGCGGATGAACAGGGTGGTGGCGGAGCTGCTCTGGCTGGAGCTCGTGTGGATTATTGATTGGTGGGCCGGTGTTAAGgtttaatttctcttgtcttagttaatgttgttgatttgagttattgttctcctctagtgcaa--ggtggtgtttattttttagttgttttgtgctttgcttg
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GCCGTTCTCGAAGAGCTTGTACCGGCGGATCAACAGGTTCTTGGCCGAGCTGCTGTGGCTTCAGCTGGTCTGGCTTGTGGATTGGTGGGCAGGAGTTAAGgtatg-ttgatatggtcagtgacaaagc-atctttctgatatgcacttcgtatcaagatttacctgttctgctaaaatgttaaaatacccacatttgatgta
upper sequence: GLYMA10G12560.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g08110.t01 (Vitis vinifera), 5'ss of exon 2
GCCGGTGTCGAAGAATCTGTACCGGCGGATGAACAGGGTGGTGGCGGAGCTGCTCTGGCTGGAGCTCGTGTGGATTATTGATTGGTGGGCCGGTGTTAAGgt-----ttaatttctcttgtct--tagttaatgttgttgatttgagttattgttctcctctagtgcaaggtggtgtttattttttagttgttttgtgctttgcttg
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GCCTCTGTCAAAAAGTACATACAGAAGGATCAACAGAGTGGTAGCAGAATTATTATGGCTCGAGCTTGTGTGGCTTATTGATTGGTGGGCAGGGGTTAAGgtattaactaatctctattgtgtattattttactttgtggttttgaaatga-acaagttttcattttaaaacagtttctggaaaaaaccattatcgagttc------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33390579|gb|CA853774.1|CA853774EST: TGCTCTGGCTGGAGCTCGTGTGGATTATTGATTGGTGGGCCGGTGTTAAG GTTCAAGTATTCACAGATCCTGAAACCTTTCGTTCAATGG
genomic: TGCTCTGGCTGGAGCTCGTGTGGATTATTGATTGGTGGGCCGGTGTTAAGgtttaatttc ... ctggcttcagGTTCAAGTATTCACAGATCCTGAAACCTTTCGTTCAATGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCGGTGTCGAAGAATCTGTACCGGCGGATGAACAGGGTGGTGGCGGAGCTGCTCTGGCTGGAGCTCGTGTGGATTATTGATTGGTGGGCCGGTGTTAAGgtttaatttctcttgtcttagttaatgttgttgatttgagttattgttctcctctagtgcaaggtggtgtttattttttagttgttttgtgctttgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG