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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTGTGAAGAAGACTAGAAAATTAGTTTCAATTATCGAGAATTGTTTGATGGGTTGATCCAAAAATCACTCTCCAAACCAGATTCGCAACACTGCAAGgtacacctaccacaaaaagtcttgaatgttaatttacctatgtaggaatgagttatattttaaggtttcaaattacagtcacagtcacaatcttttttat...

Basic information

species Glycine max
transcript GLYMA10G10040.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209710462|gb|BW661998.1|BW661998
EST:     CTCCAAACCAGATTCGCAACACTGCAAG                         TGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATAT
genomic: CTCCAAACCAGATTCGCAACACTGCAAGgtacacctac ... catttttcagTGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATAT
EST: gi|6667522|gb|AW278973.1|AW278973
EST:     ATGGGTTGATCCAAAAATCACTCTCCAAACCAGATTCGCAACACTGCAAG                         TGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATAT
genomic: ATGGGTTGATCCAAAAATCACTCTCCAAACCAGATTCGCAACACTGCAAGgtacacctac ... catttttcagTGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATAT
EST: gi|15285476|gb|BI469367.1|BI469367
EST:     ATGGGTTGATCCAAAAATCACTCTCCAAACCAGATTCGCAACACTGCAAG                         TGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATAT
genomic: ATGGGTTGATCCAAAAATCACTCTCCAAACCAGATTCGCAACACTGCAAGgtacacctac ... catttttcagTGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATAT