1 5' 3' | 2 5' 3' | 3 5' 3' |
AGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtatttctctgttcactctgtagattcatctttatgaatgtgtgtccaatcatagttatcaattgcatgtaagagctgcccccaaaaatgttaaat...
species | Glycine max |
transcript | GLYMA10G09280.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|192294086|gb|FG986175.1|FG986175
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|13563351|gb|BG551571.1|BG551571
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|192328578|gb|FK023568.1|FK023568
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|17022747|gb|BM093781.1|BM093781
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|15662585|gb|BI699948.1|BI699948
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|21677270|gb|BQ629621.1|BQ629621
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|7690948|gb|AW759084.1|AW759084
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|7284283|gb|AW596878.1|AW596878
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|15664086|gb|BI701457.1|BI701457
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|209710536|gb|BW662072.1|BW662072
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|151393123|gb|EV262998.1|EV262998
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCGCCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|192307166|gb|FK001194.1|FK001194
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCCGTTTTGTGATAAAGACEST: gi|209724946|gb|BW669636.1|BW669636
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|207841754|gb|GD813638.1|GD813638
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTAGAAAGACTAGTTTTAGTGATAEST: gi|4314038|gb|AI461157.1|AI461157
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATT-GAA-G-CT-GTTTT-GTGATA
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|209724945|gb|BW669635.1|BW669635
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|27808883|gb|CB063305.1|CB063305
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|192307167|gb|FK001195.1|FK001195
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCCGTTTTGTGATAAAGACEST: gi|23733678|gb|BU765045.1|BU765045
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|6482623|gb|AW201868.1|AW201868
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: GCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|6847781|gb|AW350071.1|AW350071
genomic: GCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGNNCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|7283899|gb|AW596500.1|AW596500
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: TGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|209724423|gb|BW662954.1|BW662954
genomic: TGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|254339698|gb|GR857823.1|GR857823
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|208206857|gb|GE002550.1|GE002550
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCC-ATAAT ACTGTACAATGAAGGAAGAATTTEST: gi|192294192|gb|FG986281.1|FG986281
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACA-TGAAGGAAGAATTT
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|18041024|gb|BM309318.1|BM309318
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|27426289|gb|CA937809.1|CA937809
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|254339699|gb|GR857824.1|GR857824
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|192328579|gb|FK023569.1|FK023569
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: CATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACEST: gi|209699481|gb|BW667669.1|BW667669
genomic: CATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtatttctctgttcactctgtagattcatctttatgaatgtgtgtccaatcatagttatcaattgcatgtaagagctgcccccaaaaatgttaaat
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