Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTACACTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATCCATGTGAATCCCAAATACTTAGAAAGACAGCGTCTACAGCAGTCCAGCAGGgtaggtgaaatgattgcacctcaatttattcttcaaagttttaaaacattgatttgactgggataggtcaagccatgatgcaaatacagaatttatgttg...

Basic information

species Glycine max
transcript GLYMA10G07660.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07660.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G36480.3 (Arabidopsis thaliana), 5'ss of exon 2
TGCTACACTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATCCATGTGAATCCCAAATACTTAGAAAGACAGCGTCTACAGCAGTCCAGCAGGgtaggtgaaatgattgcacctcaatt-tattcttcaaagttttaaaacattgatttgactgggataggtcaagccatgatgcaaatacag--aatttatgttg--
  | |||  |||   |||  | || || || || ||||| ||||| ||||||||||||||||| ||  ||||||| ||||| || ||||||||  |  ||||| |   |||||    |    | ||  |  |    ||  ||   |    ||||    |         |  |||  |  |  | ||   |    | || ||    
ATCCACAGCCAGAGCTGAGCCGCAATCTCAGCGCCCACCACATAGCATCCATGTGAATCCCAAGTATCTAGAAAGGCAGCGCCTTCAGCAGTCGGGACGGgtaagc--aatgaccaaagtaaacttgcagccactgaaagttattagtgatgatacaccctaacc---ttcagctctactagagatttcgctgttctaagtgttc