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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGTACTTTGCCAATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCGgtatgctgcttttgattttgtttgttttttaacccccttgttttgaatcctatcctacattctccccatgtttatatttgaagattgattagatttatag...

Basic information

species Glycine max
transcript GLYMA10G06240.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207690178|gb|GD671003.1|GD671003
EST:     GAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCG                         TATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
genomic: GAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCGgtatgctgct ... ctttgtgcagTATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
EST: gi|208060143|gb|GD859153.1|GD859153
EST:     TTATTAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCG                         TATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
genomic: -TA-TAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCGgtatgctgct ... ctttgtgcagTATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
EST: gi|151413206|gb|EV283014.1|EV283014
EST:     AATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCG                         TATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
genomic: AATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCGgtatgctgct ... ctttgtgcagTATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
EST: gi|51335550|gb|CO979416.1|CO979416
EST:     AATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCG                         TATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
genomic: AATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCGgtatgctgct ... ctttgtgcagTATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
EST: gi|193401238|gb|FK366821.1|FK366821
EST:     AATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCG                         TATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
genomic: AATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCGgtatgctgct ... ctttgtgcagTATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
EST: gi|208310183|gb|GE103723.1|GE103723
EST:     GAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCG                         TATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
genomic: GAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCGgtatgctgct ... ctttgtgcagTATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
EST: gi|193527402|gb|FK484256.1|FK484256
EST:     ACTTTAAGACCAAACGACACAAGAAGCG                         TATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
genomic: ACTTTAAGACCAAACGACACAAGAAGCGgtatgctgct ... ctttgtgcagTATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
EST: gi|23727880|gb|BU761975.1|BU761975
EST:     AATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCG                         TATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
genomic: AATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCGgtatgctgct ... ctttgtgcagTATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
EST: gi|57574280|gb|CX547255.1|CX547255
EST:     AATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACCCAAGAAGCG                         TATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
genomic: AATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCGgtatgctgct ... ctttgtgcagTATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
EST: gi|193339438|gb|FK304785.1|FK304785
EST:     AATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCG                         TATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
genomic: AATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCGgtatgctgct ... ctttgtgcagTATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
EST: gi|58015348|gb|CX702090.1|CX702090
EST:     AATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCG                         TATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT
genomic: AATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCGgtatgctgct ... ctttgtgcagTATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGGTACTTTGCCAATATAACTGTGAGGGATGAGCACTTTAAGACCAAACGACACAAGAAGCGgtatgctgcttttgattttgtttgttttttaacccccttgttttgaatcctatcctacattctccccatgtttatatttgaagattgattagatttatag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcccca