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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttatcttaattttcttatcttcccatgtttttttccccttatttcatcaaacttttggtctaattatgtgtctctgcttaaaatttatgtgtta...

Basic information

species Glycine max
transcript GLYMA10G06010.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209697418|gb|BW675563.1|BW675563
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|209706506|gb|BW676080.1|BW676080
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|192294406|gb|FG987335.1|FG987335
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|14206383|gb|BG840061.1|BG840061
EST:     TGCGAAAAGATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATT
genomic: TGCGAAAA-ATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATT
EST: gi|7042134|gb|AW472028.1|AW472028
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|151395376|gb|EV265247.1|EV265247
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|209706507|gb|BW676081.1|BW676081
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|192308452|gb|FK002824.1|FK002824
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|208283924|gb|GE082428.1|GE082428
EST:     GATGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|15285912|gb|BI469803.1|BI469803
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|192327388|gb|FK018150.1|FK018150
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|193553486|gb|FK510025.1|FK510025
EST:     CAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: CAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|192325567|gb|FK019423.1|FK019423
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|208266902|gb|GE060967.1|GE060967
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|8283562|gb|BE021121.1|BE021121
EST:     GTTGGCTGCTGAACAAGAGGCACACCGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|193719310|gb|FK653476.1|FK653476
EST:     CAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTA
genomic: CAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|58024531|gb|CX711272.1|CX711272
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|209697417|gb|BW675562.1|BW675562
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|192311487|gb|FK005218.1|FK005218
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCGAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|120531416|gb|EH259549.1|EH259549
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|207848740|gb|GD818015.1|GD818015
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGNGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|192328300|gb|FK020011.1|FK020011
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|192314767|gb|FK006665.1|FK006665
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|208122510|gb|GD923594.1|GD923594
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|12688761|gb|BG155097.1|BG155097
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGANAGAGGGCTGAAAAGGGAGA
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGA-AGA-GGCTGAAAA-GGAG-
EST: gi|12688293|gb|BG154629.1|BG154629
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|208222512|gb|GE016995.1|GE016995
EST:     TTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: -TTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|19938094|gb|BQ081557.1|BQ081557
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|192325874|gb|FK016551.1|FK016551
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|208129637|gb|GD928937.1|GD928937
EST:     AGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: AGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|22540338|gb|BU090181.1|BU090181
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|193500498|gb|FK464043.1|FK464043
EST:     GTTGGCTGCTGAACAGGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|31460442|gb|CD402410.1|CD402410
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|120492606|gb|EH220773.1|EH220773
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|151401027|gb|EV270841.1|EV270841
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|208312511|gb|GE113807.1|GE113807
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGCGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: gi|207842909|gb|GD815503.1|GD815503
EST:     GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG                         AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGNGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttatcttaattttcttatcttcccatgtttttttccccttatttcatcaaacttttggtctaattatgtgtctctgcttaaaatttatgtgtta

- - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC