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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATTCAACCACTAATTCAAATTTTGACGGGAACGGAACGTACTTGATCTTCAATGTAGGGGATGCAATTTTCATAAGTGATTTGAATTCACAAGACAAGgtatattggttgggttaggtggatggattgtatttattttgattttattcacgagaggtttcttgttcaatgtag

Basic information

species Glycine max
transcript GLYMA10G05890.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05890.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 2
TAATTCAACCACTAATTCAAATTTTGACGGGAACGGAACGTACTTGATCTTCAATGTAGGGGATGCAATTTTCATAAGTGATTTGAATTCACAAGACAAGgtatattggt------------tgggttaggtggatggattgtatttat--tttgattttattcacgagaggtttcttgttcaatgtag
|||| | ||   || ||| |||||||| ||||| || || |||||||| |||||||| ||||||||||| || ||  ||||||||||| | ||||| ||||||  ||| |             || ||   |  ||   |  | | |    || || ||   |   ||||||||| || || |||||||
TAATCCGACAGGTACTTCCAATTTTGATGGGAAAGGGACTTACTTGATTTTCAATGTTGGGGATGCAATATTTATCTGTGATTTGAATACGCAAGATAAGgtaatttgatgttttctggctgcggttttaatcaataattcatgtcttgcgttggaattggattttgagaggtttgttttttaatgtag