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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGACGTCGATAAGCACCGCGATGCTAATGTCTCTGGCGACGATGCCTTTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCCTACTTCAGgtacgccccggcagaattttgcacaactcaatttgtgccctaattggtcaatttctcttcaaaatcacggaattagggtattctctcacggtgtatggagggcagaaatctgatatatgttttttaatttttgtgtag

Basic information

species Glycine max
transcript GLYMA10G05870.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209719210|gb|BW679776.1|BW679776
EST:     TTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCCTACTTCAG                         AAAGCAGAAAGTGCTTCCAAGGAGAAAGGTAAGGCATCAGCTGTAGCGATC
genomic: TTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCCTACTTCAGgtacgccccg ... ttttgtgtagAAAGCAGAAAGTGCTTCCAAGGAGAAAGGTAAGGCATCAGCTGTAGCGATC
EST: gi|26048180|gb|CA784745.1|CA784745
EST:     TTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCCTACTTCAG                         AAAGCAGAAAGTGCTTCCAAGGAGAAAGGTAAGGCATCAGCTGTAGCGATC
genomic: TTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCCTACTTCAGgtacgccccg ... ttttgtgtagAAAGCAGAAAGTGCTTCCAAGGAGAAAGGTAAGGCATCAGCTGTAGCGATC
EST: gi|298198162|gb|HO039701.1|HO039701
EST:     TTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCCTACTTCAG                         AAAGCAGAAAGTGCTTCCAAGGAGAAAGGTAAGGCATCAGCTGTAGCGATC
genomic: TTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCCTACTTCAGgtacgccccg ... ttttgtgtagAAAGCAGAAAGTGCTTCCAAGGAGAAAGGTAAGGCATCAGCTGTAGCGATC
EST: gi|26048411|gb|CA784901.1|CA784901
EST:     TTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCCTACTTCAG                         AAAGCAGAAAGTGCTTCCAAGGAGAAAGGTAAGGCATCAGCTGTAGCGATC
genomic: TTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCCTACTTCAGgtacgccccg ... ttttgtgtagAAAGCAGAAAGTGCTTCCAAGGAGAAAGGTAAGGCATCAGCTGTAGCGATC
EST: gi|21888729|gb|BQ741942.1|BQ741942
EST:     TTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCCTACTTCAG                         AAAGCAGAAAGTGCTTCCAAGGAGAAAGGTAAGGCATCAGCTGTAGCGATC
genomic: TTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCCTACTTCAGgtacgccccg ... ttttgtgtagAAAGCAGAAAGTGCTTCCAAGGAGAAAGGTAAGGCATCAGCTGTAGCGATC
EST: gi|9565687|gb|BE475196.1|BE475196
EST:     TTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCCTACTTCAG                         AAAGCAGAAAGTGCTTCCAAGGAGAAAGGTAAGGCATCAGCTGTAGCGATC
genomic: TTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCCTACTTCAGgtacgccccg ... ttttgtgtagAAAGCAGAAAGTGCTTCCAAGGAGAAAGGTAAGGCATCAGCTGTAGCGATC