1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAAAGTGAGGAATGCGAAGAAAATGGGGAGGAAAGGAAATAGTTGGTTTTCTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGgttaagataaaatttatatttaacctatctcaggtatccaggatgttccttattctgttagcaactgcttttgcag
species | Glycine max |
transcript | GLYMA10G05720.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAG AATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGCAGACTEST: gi|193374323|gb|FK339303.1|FK339303
genomic: CTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGgttaagataa ... gcttttgcagAATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGCAGACT
EST: CTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAG AATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGEST: gi|213590595|gb|DB968131.1|DB968131
genomic: CTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGgttaagataa ... gcttttgcagAATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTG
EST: CTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAG AATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGCAGACT
genomic: CTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGgttaagataa ... gcttttgcagAATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGCAGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAGTGAGGAATGCGAAGAAAATGGGGAGGAAAGGAAATAGTTGGTTTTCTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGgttaagataaaatttatatttaacctatctcaggtatccaggatgttccttattctgttagcaactgcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC