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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCACAGTTGCAGAAGGTATTGGAAAGGATCACAGGGCAACACACTGTGCCAAATGTATTTATTGgtaagttctaagtagttgtaccatcttggatgcattattaatacttaatcatactatgccatcaccatctacaatattggttccttgttactgtttggtg...

Basic information

species Glycine max
transcript GLYMA10G04770.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G04770.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0005g04860.t01 (Vitis vinifera), 5'ss of exon 3
---------GGCCACAGTTGCAGAAGGTATTGGAAAGGATCACAGGGCAACACACTGTGCCAAATGTATTTATTGgtaagttctaagtagttgtaccatcttggatgcattattaata--cttaa-tcatactatgccat-caccatctacaatattggttccttgttactgtttggtg
         |||||||| ||||||||||  |||||||| | || || ||||| ||||| |||||||| ||||||||||||    ||||  || ||     |  |||  | | || |||  ||| | |   |  ||||| |  |   | |  |    |  ||   |      | |    |
GACCCCAAGGGCCACAGCTGCAGAAGGTGCTGGAAAGGCTTACTGGACAACATACTGTTCCAAATGTTTTTATTGgtaag----aagtgcttatatttattgtgatatagttttgatatacttgacttggaagatgccttgtagtttatctaggcctcatttaattccttcgctgaagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9902605|gb|BE611636.1|BE611636
EST:     GGTATTGGAAAGGATCACAGGGCAACACACTGTGCCAAATGTATTTATTG                         GTGGCAAACACATTGGCGGCTGTACAG
genomic: GGTATTGGAAAGGATCACAGGGCAACACACTGTGCCAAATGTATTTATTGgtaagttcta ... ttcgttgcagGTGGCAAACACATTGGCGGCTGTACAG
EST: gi|23061247|gb|BU578451.1|BU578451
EST:     GGTATTGGAAAGGATCACAGGGCAACACACTGTGCCAAATGTATTTATTG                         GTGGCAAACACATTGGCGGCTGTACAG
genomic: GGTATTGGAAAGGATCACAGGGCAACACACTGTGCCAAATGTATTTATTGgtaagttcta ... ttcgttgcagGTGGCAAACACATTGGCGGCTGTACAG
EST: gi|17519765|gb|BM188807.1|BM188807
EST:     GGTATTGGAAAGGATCACAGGGCAACACACTGTGCCAAATGTATTTATTG                         GTGGCAAACACATTGGCGGCTGTACAG
genomic: GGTATTGGAAAGGATCACAGGGCAACACACTGTGCCAAATGTATTTATTGgtaagttcta ... ttcgttgcagGTGGCAAACACATTGGCGGCTGTACAG
EST: gi|21887571|gb|BQ740784.1|BQ740784
EST:     GGTATTGGAAAGGATCACAGGGCAACACACTGTGCCAAATGTATTTATTG                         GTGGCAAACACATTGGCGGCTGTACAG
genomic: GGTATTGGAAAGGATCACAGGGCAACACACTGTGCCAAATGTATTTATTGgtaagttcta ... ttcgttgcagGTGGCAAACACATTGGCGGCTGTACAG