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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTAGGTTTGATCTTGCGTATAACGTTCTTTTTAAATGCACTAAGAAGAAGCTGTGTGAGTATACCAATCTACATGCCTACATGCGTGACATTTATCAGgtagatgaagattttcaaattatctacccatcaatttttgtgttgttgattataatttcgtgctgaatactgtgtggtacgtggtgatggcatttgacag

Basic information

species Glycine max
transcript GLYMA10G04570.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G04570.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0005g04180.t01 (Vitis vinifera), 5'ss of exon 2
GATTAGGTTTGATCTTGCGTATAACGTTCTTTTTAAATGCACTAAGAAGAAGCTGTGTGAGTATACCAATCTACATGCCTACATGCGTGACATTTATCAGgtagatgaagattttcaaattatctacccatcaatttttgtgttgttgattataatttcgtgctgaatactgtgtggtacgtggtgatggcatttgacag
| || | || ||||||| ||| ||||||||||| |||||||| |||||||||||   ||||||| ||||||| ||||  |||||||| |||||||| ||||||   |    || | |||  || ||      | || | ||    ||   | |   |  |  || || | |||||  |   |        ||        
GGTTCGTTTCGATCTTGTGTACAACGTTCTTTTCAAATGCACGAAGAAGAAGCTTCTTGAGTATCCCAATCTTCATGGATACATGCGAGACATTTACCAGgtactagtttgttctgaaaacatttatta--tatttatggtacgatttcatgtgggtgtgc-ctaaaaagtgtgta-tctattccctgaacag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403401|gb|EV273211.1|EV273211
EST:     AGCTGTGTGAGTATACCAATCTACATGCCTACATGCGTGACATTTATCAG                         ATTCCGAAGGTGGCAGCTACTTGCAATTTTACTGAGATTATGGATGGTTAC
genomic: AGCTGTGTGAGTATACCAATCTACATGCCTACATGCGTGACATTTATCAGgtagatgaag ... catttgacagATTCCGAAGGTGGCAGCTACTTGCAATTTTACTGAGATTATGGATGGTTAC