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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGAGCACCTTACCTCCGCAAAGTTGACTTGAAGATGTACAAGAGTTACCCTGAGCTCTCTGATGCCTTGGGCAAAATGTTTAGCTCCTTCACCATTGgtaactataattaatccataatttaccatacattaacttttttttatatagaatttaatgactgatcataacttttacgtatcagtatctagtttgtttt...

Basic information

species Glycine max
transcript GLYMA10G03720.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G03720.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0141g00290.t01 (Vitis vinifera), 5'ss of exon 2
GATGGAGCACCTTACCTCCGCAAAGTTGACTTGAAGATGTACAAGAGTTACCCTGAGCTCTCTGATGCCTTGGGCAAAATGTTTAGCTCCTTCACCATTGgtaactataattaatccataatttaccatacattaactttttttt-atata-gaatttaatgactgatcataacttttacgtatcagtatctagtttgtttt
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GACGGAGCGCCGTATCTGCGTAAGGTTGACTTGAAGATGTACACTAGTTATCAGGAGCTGTCCAATGCCTTGGGCAACATGTTCAGCTCCTTCACTATTGgtgagtataat--gccaaaaattaaagtgatagaagttctaactcgatatatgtactcaattacttttaattggaaactcatttgacctcaaaagtgataat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283204|gb|BE020765.1|BE020765
EST:     CCCTGAGCTCTCTGATGCCTTGGGCAAAATGTTTAGCTCCTTCACCATTG                         GAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGA
genomic: CCCTGAGCTCTCTGATGCCTTGGGCAAAATGTTTAGCTCCTTCACCATTGgtaactataa ... tatatttaagGAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGA
EST: gi|12772249|gb|BG237176.1|BG237176
EST:     CCCAGAGCTCTCTGATGCCTTGGGCAAAATGTTTAGCTCCTTCACCATTG                         GAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGA
genomic: CCCTGAGCTCTCTGATGCCTTGGGCAAAATGTTTAGCTCCTTCACCATTGgtaactataa ... tatatttaagGAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGA
EST: gi|9820706|gb|BE556216.1|BE556216
EST:     CCTGAGCTCTCTGATGCCTTGGGGCAAA-TGTTTAGCTCCTTCACCATTG                         GAAATTGTGAATCC-AAGGCTTCAAGGATT-CATGAATGAGAGCAAGTTGA
genomic: CCTGAGCTCTCTGATGCCTTGGG-CAAAATGTTTAGCTCCTTCACCATTGgtaactataa ... tatatttaagGAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGA
EST: gi|16345396|gb|BI970991.1|BI970991
EST:     ATGTTTAGCTCCTTCACCATTG                         GAAATTGTGAATCCCAAGGCTTCAAGGANNNCATGAATGAGAGCAAGTTGA
genomic: ATGTTTAGCTCCTTCACCATTGgtaactataa ... tatatttaagGAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGA
EST: gi|214005956|gb|DB986559.1|DB986559
EST:     GATGCCTTGGGCAAAATGTTTAGCTCCTTCATCATTG                         GAAATTGTGACTCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGA
genomic: GATGCCTTGGGCAAAATGTTTAGCTCCTTCACCATTGgtaactataa ... tatatttaagGAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGA
EST: gi|16345395|gb|BI970990.1|BI970990
EST:     CCCTGAGCTCNCTGATGCCTTGGGCNNNATGTTTAGCTCCTTCACCATTG                         GAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGA
genomic: CCCTGAGCTCTCTGATGCCTTGGGCAAAATGTTTAGCTCCTTCACCATTGgtaactataa ... tatatttaagGAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGA