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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGCTGGGGCACTGATTATCTTCTCAAAGCCACTGCACATCCAAACACCATTTATGTTCAGgtcagttaagacaacaacactcttgctaaaatcaacttatacccttttgaaagtaactatggaaaagttttttttttcaaatatggggtaagtcttctttagattctgatatttgtttgtttgtttgttattgggctttgcag

Basic information

species Glycine max
transcript GLYMA10G02130.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02130.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G02800.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTAATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGCTGGGGCACTGATTATCTTCTCAAAGCCACTGCACATCCAAACACCATTTATGTTCAGgtcagttaagacaac---aacactcttgctaaaatcaacttatacccttttgaaagtaactatgga--aaagttttttttttcaaatatggggtaagtcttctttagattctgatatttgtttgtttgtttgttattgggctttgcag
 || ||||||  |||||| |  || || | ||| || ||||| ||||  ||||| | ||| |||||||||||| |||||||  | |||||||||||||||||   |||          ||  ||||     |||  ||   | |    ||||  |   |   |||   || |||    | |||| |                                                              
TCTCATGAAATCTGAGTTACCAAACGCAAAAGACGCTATTCGTTGGGCTACTGACTTTCTCCTCAAAGCCACTTCACATCCTGATACCATTTATGTTCAGgttttttactttgctctaaattctctcctcgaaaaaaaaaaacaagactttgggaaacagagtggtttaacgttagcgtgttcatag-------------------------------------------------------------

upper sequence: GLYMA10G02130.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0005g00740.t01 (Vitis vinifera), 5'ss of exon 2
GCTAATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGCTGGGGCACTGATTATCTTCTCAAAGCCACTGCACATCCAAACACCATTTATGTTCAGgtcagttaagacaacaacactcttgctaaaatcaacttatacccttttgaaagtaactatggaaaagttttttttttcaaatatggggtaagtcttctttagattctgatatttgtttgtttgtttgttattgggctttgcag
| | |||||||||||||||||| |||||| ||| |||||||| |||| ||||||||| || |||||||||||||  |||||| |||||||||| ||||||||   ||  |          | ||  | | |||      |  |  ||| | || |  ||   | |  |  ||    || || |||  |     ||     || || | |     |||| | ||                    
GTTGATGAAAGGTGAGTTGCAGCATGCCAAAGAAGCCATTCGTTGGGCCACTGATTACCTCCTCAAAGCCACTGTCCATCCAGACACCATTTACGTTCAGgtt--ttgtg----------ttttcttcagatctctgcttctctatttcagagcagttacctacatttgattagagtcgaaaatgcagaggagctg----aggttttaacggg-gtttttctgcag-----------------