Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGCTGTTGCAGATGATCTGAACTCTGCACATTCAACACCCTGTGAATGGTTTGTCTGTGATGATGACCAGAGTGCTACAAGGTTTTTCGTTATTCAGgtggggaaacttaattgagtacatactcttgctttttgcactataattgtacttgttggttgcagcttgcaagtttgctgtaatttgcgaaaatttgtga...

Basic information

species Glycine max
transcript GLYMA10G01770.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G01770.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0005g01240.t01 (Vitis vinifera), 5'ss of exon 3
GCAGGCTGTTGCAGATGATCTGAACTCTGCACATTCAACACCCTGTGAATGGTTTGTCTGTGATGATGACCAGAGTGCTACAAGGTTTTTCGTTATTCAGgtgg--ggaaacttaattgagtacatactcttgctttttgcactat--aattgtacttgttggttgcagcttgcaagtttgc---tgtaatttg---cgaaaatttgtga--------------------
|||||||||||| |||||| ||||||| |  | | ||||||||||||| |||||  | ||||| ||||||| || ||  ||||| || ||||| |||||||| |  | ||||  ||     |   | |  ||  | |||     ||  | |||| | ||||   || | |||     ||| |   | | ||||    | |||| || ||                     
GCAGGCTGTTGCCGATGATTTGAACTCAGTGCTTACAACACCCTGTGAGTGGTTCATATGTGACGATGACCGGACTGGAACAAGATTCTTCGTCATTCAGgttgaagaaaacccaaaactctttcttcatttcatatttatttgattgatttgttcatgttttgtgaatctttggcattttcctctctgattttactcaaaaacttttggtgtcatattttaatgtgcag