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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAATAGACAACATCAAGTCTCAAGTTGAGAGCTTATGTCCTGGTGTTGTTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtattatatatatatatatatatatatcaaaacgctacacaataattaacataaaacccatatataatgagttactcctagctaggtactaataatttattgaaatatgatctatctcttag

Basic information

species Glycine max
transcript GLYMA09G41440.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295821|gb|FG990873.1|FG990873
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
EST: gi|15199262|gb|BI423742.1|BI423742
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTGCAATTGGGGAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
EST: gi|151411350|gb|EV281161.1|EV281161
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTACAATTGGGCAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
EST: gi|192311047|gb|FK004736.1|FK004736
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
EST: gi|16346302|gb|BI971897.1|BI971897
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
EST: gi|192326883|gb|FK019190.1|FK019190
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
EST: gi|192311048|gb|FK004737.1|FK004737
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
EST: gi|19935574|gb|BQ080496.1|BQ080496
EST:     TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCT                         CTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT
genomic: TTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtatta ... tatctcttagCTTGGTGGACCTAGTTGGACAGTGCAATTGGGCAGAAGAGACTCAACCACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTAATAGACAACATCAAGTCTCAAGTTGAGAGCTTATGTCCTGGTGTTGTTTCTTGTGCTGATATTCTCACTGTAGCTGCAAGGGACTCTGTTGTTGCTgtaagtattatatatatatatatatatatatcaaaacgctacacaataattaacataaaacccatatataatgagttactcctagctaggtactaataatttattgaaatatgatctatctcttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC