Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTTCAGATTTCCAATGACGACCTTTCGAAAATGGTTGATACTAATGATGAATGGATATCTGTTCGCACCGGAATTCGTAGACGACGAGTTCTTTCAGgttagtcattggcagtggcattagtgattagtcccatcttgcatgctagtactagtgtgctataaacagataggtacagtggttagaatttgattagatt...

Basic information

species Glycine max
transcript GLYMA09G41380.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G41380.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G62640.2 (Arabidopsis thaliana), 5'ss of exon 3
GCTCTTCAGATTTCCAATGACGACCTTTCGAAAATGGTTGATACTAATGATGAATGGATATCTGTTCGCACCGGAATTCGTAGACGACGAGTTCTTTCAGgttagtcattggcagtggcattagtgattagtcccatcttgcatgctagtactagtgtgctataaacagataggtacagtggttagaatttgattagatt
  ||||| |||||| ||||| || ||  | ||||| |||||||||||||||||||||||  ||  ||| || || ||||| |  || |||||| | |||||| |  |||      |  ||||  |||||||| ||       ||| ||     || ||   |     ||| || |  | | || | | | | |||  |  
AGTCTTCTGATTTCTAATGATGATCTCGCTAAAATAGTTGATACTAATGATGAATGGATTGCTACTCGTACTGGTATTCGCAACCGTCGAGTTGTCTCAGgtaa--cat-----ataacatt--tgattagttccgct----atgttaagctaagagtatca--ggtagagagattaatttgtaaaactataattgaag-

upper sequence: GLYMA09G41380.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0154g00140.t01 (Vitis vinifera), 5'ss of exon 2
GCTCTTCAGATTTCCAATGACGACCTTTCGAAAATGGTTGATACTAATGATGAATGGATATCTGTTCGCACCGGAATTCGTAGACGACGAGTTCTTTCAGgttagtcattggcagtggcattagtgattagtcccatcttgcatgctagtactagtgtgctataaacagataggtacagtggttagaatttgattagatt-
  ||||||||| || ||||| || ||| | ||||| ||||| |||  ||| |||||||||||||||||||| || |||||||  ||||||||||| |||||| ||| |||    ||||   || | | |      |  |||  |  |   |  |||     ||          |  | | | || |  |  | ||  ||  
AGTCTTCAGATATCTAATGATGATCTTGCAAAAATTGTTGAAACTTCTGACGAATGGATATCTGTTCGCACTGGCATTCGTAACCGACGAGTTCTCTCAGgtcagtaattctttgtggtgctaattaatgccaggaatttgggt-ttgtgaacagttcaaaatttctttgcttgccctgagctttgcctgaggttgaatgc

upper sequence: GLYMA09G41380.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0233g00060.t01 (Vitis vinifera), 5'ss of exon 2
GCTCTTCAGATTTCCAATGACGACCTTTCGAAAATGGTTGATACTAATGATGAATGGATATCTGTTCGCACCGGAATTCGTAGACGACGAGTTCTTTCAGgttagtcattggcagtggcattagtgattagtcccatcttgcatgctagtactagtgtgctataaacagataggtacagtggttagaatttgattagatt-
   |||||||| || ||||| || ||| | ||||| ||||| |||  |||||||||||||||||||||||| || |||| ||  ||||||||||| |||||||||| |||    ||||   || | |        |  |||  |  |   |   ||     ||          |  | | | || |  |  | ||  ||  
AGCCTTCAGATCTCTAATGATGATCTTGCAAAAATTGTTGAAACTTCTGATGAATGGATATCTGTTCGCACTGGCATTCATAATCGACGAGTTCTCTCAGgttagtaattctttgtggtcctaattaacgccaggaatttgggt-ttgtgaacggttcaaaattgctttgcttgccctgagctttgcctgaggttgaatgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15203045|gb|BI425813.1|BI425813
EST:     TGAATGGATATCTGTTCGCACCGGAATTCGTAGACGACGAGTTCTTTCAG                         GCAAAGATAACTTGACAAGTTTAGCAGTAGAGGCTTCTAGGAAAGCTCTTG
genomic: TGAATGGATATCTGTTCGCACCGGAATTCGTAGACGACGAGTTCTTTCAGgttagtcatt ... gtgcttgcagGCAAAGATAACTTGACAAGTTTAGCAGTAGAGGCAGCTAGGAAAGCTCTTG
EST: gi|192330256|gb|FK020556.1|FK020556
EST:     TGAATGGATATCTGTTCGCACCGGAATTCGTAGACGACGAGTTCTTTCAG                         GCAAAGATAACTTGACAAGTTTAGCAGTAGAGGCAGCTAGGAAAGCTCTTG
genomic: TGAATGGATATCTGTTCGCACCGGAATTCGTAGACGACGAGTTCTTTCAGgttagtcatt ... gtgcttgcagGCAAAGATAACTTGACAAGTTTAGCAGTAGAGGCAGCTAGGAAAGCTCTTG