1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGGCAATGGTGGGACTATGTTACTGACTTTGCAATTCGTTGCCCCATGAAAGAGAATAAGTACTCAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGgtaggttgggaagttcacgtttctttgcatactctatggaactatcttgtgtttctgtttgctgtttgattttgaatgacttgtgaaaatttgcccaaag...
species | Glycine max |
transcript | GLYMA09G41070.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAGAATAAGTACTCAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTG GTGCTGATCTGAAGAAGATTAAAGACTGCGTTGGAGATCCCCATGCAGATGEST: gi|27423591|gb|CA935111.1|CA935111
genomic: AGAGAATAAGTACTCAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGgtaggttggg ... tactttacagGTGCTGATCTGAAGAAGATTAAAGACTGCGTTGGAGATCCCCATGCAGATG
EST: AGAGAATAAGTACTCAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTG GTGCTGATCTGAAGAAGATTAAAGACTGCGTTGGAGATCCCCATGCAGATGEST: gi|20811827|gb|BQ296305.1|BQ296305
genomic: AGAGAATAAGTACTCAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGgtaggttggg ... tactttacagGTGCTGATCTGAAGAAGATTAAAGACTGCGTTGGAGATCCCCATGCAGATG
EST: AGAGAATAAGTACTCAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTG GTGCTGATCTGAAGAAGATTAAAGACTGCGTTGGAGATCCCCATGCAGATG
genomic: AGAGAATAAGTACTCAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGgtaggttggg ... tactttacagGTGCTGATCTGAAGAAGATTAAAGACTGCGTTGGAGATCCCCATGCAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCAATGGTGGGACTATGTTACTGACTTTGCAATTCGTTGCCCCATGAAAGAGAATAAGTACTCAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGgtaggttgggaagttcacgtttctttgcatactctatggaactatcttgtgtttctgtttgctgtttgattttgaatgacttgtgaaaatttgcccaaag
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