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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAACAGTTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatcatatatgtgtgtgcagtgtgcttgtgtgtgtattatgtgaattttgtatttatctatcattatcaattaatcattttacataaaactatgcttacatccgagaaactagaatttttcttttcttatttagcaaagatccatttagttgagaatttagtctgattgtgatttttctatatgggtttacag

Basic information

species Glycine max
transcript GLYMA09G40990.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213608125|gb|DB972593.1|DB972593
EST:     TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG                         CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACTCCTATGTTA
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTA
EST: gi|193365164|gb|FK331433.1|FK331433
EST:     TGGAATCATTTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG                         CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTA
genomic: TGGAATCATTT-CAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTA
EST: gi|208195566|gb|GD991243.1|GD991243
EST:     TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG                         CTGATGCCCTTGTTTCTAACTAGGTACTTTACCAAGCTTGGATAC
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTA-CT-GGT-CTTT-CCAAGCTTGGATAC
EST: gi|213595971|gb|DB966274.1|DB966274
EST:     CTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG                         CTGATGCCCTTGTGTCTACTGGTCTTTCCAAGCTTGGATACTCCTATGTTA
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTA
EST: gi|208148837|gb|GD944993.1|GD944993
EST:     TTGGAATCATTTCAGCTGTCAAAGTAACGAAAGAATGATCAGAGAAACTG                         CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTT
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTT
EST: gi|207689956|gb|GD673525.1|GD673525
EST:     TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG                         CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTA
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTA
EST: gi|193629905|gb|FK576025.1|FK576025
EST:     TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG                         CTGATGCCCTTGTTTCTACTGGTCTT
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTT
EST: gi|208304429|gb|GE104356.1|GE104356
EST:     TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG                         CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACAACCTAATGT
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACA-CCTA-TGT
EST: gi|208076712|gb|GD875641.1|GD875641
EST:     TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG                         CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTAT
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTAT
EST: gi|208181405|gb|GD974658.1|GD974658
EST:     TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG                         CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATTCACCTATGTTA
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTA
EST: gi|213589246|gb|DB957778.1|DB957778
EST:     TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTG                         CTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACTCCTATGTTA
genomic: TTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatc ... gggtttacagCTGATGCCCTTGTTTCTACTGGTCTTTCCAAGCTTGGATACACCTATGTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGAACAGTTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGgtatttgatcatatatgtgtgtgcagtgtgcttgtgtgtgtattatgtgaattttgtatttatctatcattatcaattaatcattttacataaaactatgcttacatccgagaaactagaatttttcttttcttatttagcaaagatccatttagttgagaatttagtctgattgtgatttttctatatgggtttacag

- - - - - - - - - - TCAGCT
- - - - - - - - - -  CAGCTG