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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCTCATGGTACCGCTGTAGGCCTTCCAACAGAAGATGACATGGGTAATAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGTCGCATATTTGCTCAGGGgtaaactaaaactagcctctctttttcatctatttggccccatgcttatgttactaccaaggttttaaattgtggtcgcatggctgtcgatttagggata...

Basic information

species Glycine max
transcript GLYMA09G40690.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g60190.2 (Oryza sativa), 5'ss of exon 2
GGGCTCATGGTACCGCTGTAGGCCTTCCAACAGAAGATGACATGGGTAATAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGTCGCATATTTGCTCAGGGgtaaactaaaactagcctctctttttcatctatttggcc-ccat-gcttatgttactaccaaggttttaaattgtggtcgcatggctgtcgatttagggata
 ||||||||| || ||||| || ||||| |  |||||||||||||| || || ||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||     |         |||| ||  ||||||   | || | ||   | |||    | |||||       |   |  |   | ||  | |||     
AGGCTCATGGAACAGCTGTTGGTCTTCCTAGCGAAGATGACATGGGCAACAGCGAAGTGGGTCACAATGCTCTTGGTGCTGGTCGCATTTTTGCTCAGGGgtaagctgttgttgag------ttttgattcatttgggaactataggttggatcactctgcatgttttgtgacaagcgtgtttcattctcactgtag-----

upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g40420.1 (Oryza sativa), 5'ss of exon 3
GGGCTCATGGTACCGCTGTAGGCCTTCCAACAGAAGATGACATGGGTAATAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGTCGCATATTTGCTCAGGGgtaaac-taaaactagcctctctttttcatctatttggccccatgcttatgttactaccaaggttttaaattgtggt-cgcatggctgtcgatttagggata
 ||||||||| || ||||| || || ||  | || |||||||||||||| ||||| ||||| || || || ||||| |||||||| || |||||||| ||||| |  |    |  |  ||||||||| ||           ||   ||||  |      | ||    ||| | | |      |  ||   | | |    | |
AGGCTCATGGAACAGCTGTTGGTCTCCCTTCTGATGATGACATGGGTAACAGTGAGGTTGGGCATAACGCACTTGGTGCTGGTCGGATTTTTGCTCAAGGgtacatgtttctcctggttctcttttttattagcacactgtcag--ttataatctgtggatggccaaaaagtattgcgtttgtttctaaaggtcttattaca

upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G833389_T02 (Zea mays), 5'ss of exon 3
GGGCTCATGGTACCGCTGTAGGCCTTCCAACAGAAGATGACATGGGTAATAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGTCGCATATTTGCTCAGGGgtaaactaaaactagcctctctttttcatctatttggccccatgcttatgttactaccaaggttttaaattgtggtcgcatggctgtcg-atttagggata-------
 ||||||||| || ||||| ||||| ||| | || ||||||||||| || |||||||||||||||||||| ||||| |||||||| || || || || |||||   || |       | | | |||  | | |||||    ||| ||    |  || ||| ||  |  | ||  || |  |   | | | ||||    ||        
AGGCTCATGGAACAGCTGTGGGCCTCCCATCTGATGATGACATGGGCAACAGTGAAGTTGGTCACAATGCACTTGGTGCTGGTCGAATTTTCGCCCAAGGgtatgttaga-------tgtttattttgttt-tttggaaatatgttttctgttgtaacaatgtgatgtactgatgtggtttcaatattgcatttgaacatgatgccca

upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G003385_T02 (Zea mays), 5'ss of exon 3
GGGCTCATGGTACCGCTGTAGGCCTTCCAACAGAAGATGACATGGGTAATAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGTCGCATATTTGCTCAGGGgtaaactaaaactagcctctctttttcatctatttggccccatgcttatgttactaccaaggttttaa-attgtggtcg--catggctgtcgatttagggata
 ||||||||| || ||||| || || ||| | || ||||||||||| || |||||||||||||||||||| ||||| |||||||| || || || || |||||   || |  |    |   ||||  |  ||| |   |   ||    |  | |  |   ||||| || ||||   | |  |||   ||||||   ||  |||
AGGCTCATGGAACAGCTGTGGGTCTCCCATCTGATGATGACATGGGCAACAGTGAAGTTGGTCACAATGCACTTGGTGCTGGTCGGATTTTCGCCCAAGGgtatgttagatatttagttatttttggaaatatgttttctgttgtaactaatgc-gctgtggtttcaatattgcatttgaacatcaatgtcgaa--agctata

upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0056g00200.t01 (Vitis vinifera), 5'ss of exon 2
GGGCTCATGGTACCGCTGTAGGCCTTCCAACAGAAGATGACATGGGTAATAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGTCGCATATTTGCTCAGGGgtaaactaaaactagcctctctttttcatctatttggccccatgcttatgttactaccaaggttttaaattgtggtcgcatggctgtcgatttagggata-
 ||||||||| |  || ||||| |||||||| || ||||||||||| || ||||||||||| || ||||||||||| ||||| ||||||| |||||| |||| || |     |      | | |||| | |||            |  | | ||    |       |   |||     ||    | | ||||      |  
AGGCTCATGGGAGTGCAGTAGGGCTTCCAACTGAGGATGACATGGGCAACAGTGAAGTTGGCCATAATGCTCTTGGTGCTGGACGCATATATGCTCAAGGgtgaatttctcttcctgattttatttcttttatgaaatttttacatattataacctttatacacccaggatgtcccttcacaagt-ttgattcctttttga

upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ14459 (Selaginella moellendorffii), 5'ss of exon 2
GGGCTCATGGTACCGCTGTAGGCCTTCCAACAGAAGATGACATGGGTAATAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGTCGCATATTTGCTCAGGGgtaaactaaaactagcctctctttttcatctatttggccccatgcttatgttactaccaaggttttaaattgtggtcgcatggctgtcgatttagggata
 ||| |||||  | || || ||||||||||| || ||||||||||| |||||||| ||||||||||||||| | || || || || || |||||||| |||||   |     |||    ||| | | | || | |  | |  || || ||||  | |||   ||| |                                 
AGGCGCATGGACCTGCCGTCGGCCTTCCAACCGAGGATGACATGGGAAATAGTGAGGTTGGTCACAATGCTTTGGGAGCGGGACGTATTTTTGCTCAAGGgtattttg----tagagcttctctgtgagctttct--cacagtgtttttgttcttccca---tttcag--------------------------------

upper sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ26058 (Selaginella moellendorffii), 5'ss of exon 2
GGGCTCATGGTACCGCTGTAGGCCTTCCAACAGAAGATGACATGGGTAATAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGTCGCATATTTGCTCAGGGgtaaactaaaactagcctctctttttcatctatttggccccatgcttatgttactaccaaggttttaaattgtggtcgcatggctgtcgatttagggata
 ||| |||||  | || || ||||||||||| || ||||||||||| |||||||| ||||||||||||||| | || || || || || |||||||| |||||   |  |   ||| |||||  |     |  |   | |  |  || ||||  | |||   ||| |                                 
AGGCGCATGGACCTGCCGTCGGCCTTCCAACCGAGGATGACATGGGAAATAGTGAGGTTGGTCACAATGCTTTGGGAGCGGGACGTATTTTTGCTCAAGGgtattttgtag--agcttctctcgtgagctttct---cacagtttttttgttcttccca---tttcag--------------------------------