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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTCGTTTTCTACAGAAGCTTTGTGATGATTCACAGATATTGGTAGACATTTTTATCAACTATGACTGTGATGTCAATTCAACAAACATATTTGAGAGgtttgctatgttttgttttatttggtattctctatgaataatttgttttattttacatttataatttataatatggatccccattccccagtttattatc...

Basic information

species Glycine max
transcript GLYMA09G40480.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40480.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g14260.1 (Oryza sativa), 5'ss of exon 2
TGCTTCGTTTTCTACAGAAGCTTTGTGATGATTCACAGATATTGGTAGACATTTTTATCAACTATGACTGTGATGTCAATTCAACAAACATATTTGAGAGgt---ttgctatgttttgtttta--tttggt-attctctatgaataatttgttttattttacatttataatttataatatggatccccattccccagtttattatc-----------------
| |||||||| ||  | || || |||| |||||| || || ||||||||||||||| |||| ||||| ||||||||  | ||| ||||||||||||||||||   ||   ||  | |  || |  | | || |   ||| |  | |  |           || | ||  | | || |   |||| |  |      | | | |||||                 
TTCTTCGTTTCCTGGAAAAACTCTGTGCTGATTCTCAAATCTTGGTAGACATTTTTCTCAATTATGATTGTGATGTACACTCATCAAACATATTTGAGAGgtaatttataatactgtaattgagctatagtgagcttctttttaaaggtccccccgaaggacctataacactcatta---ggatgctaaccagatattgtgttatcttaattttggactacag

upper sequence: GLYMA09G40480.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 2
TGCTTCGTTTTCTACAGAAGCTTTGTGATGATTCACAGATATTGGTAGACATTTTTATCAACTATGACTGTGATGTCAATTCAACAAACATATTTGAGAGgtttgct---atgttttgttttatttggtatt--ctctatgaata-atttgttttattttac----------atttataatttata------atatggatccccattccccagtttattatc--------------------
||||||| ||  |  | ||||| || | |||||||||||| |||||||| || || ||||||||||| || |||||||| ||| | || ||||||||||||| || |   || | ||||| |   |  | ||  | |  |||||  |||| |||| |  ||           ||   ||| |  |       || || |    |||||     | ||||                       
TGCTTCGGTTCTTGGACAAGCTCTGCGTTGATTCACAGATTTTGGTAGATATCTTCATCAACTATGATTGCGATGTCAACTCATCCAATATATTTGAGAGgtatgatctaatatcttgttgtggcttatctttacgccctgaatctatttattttgtggtatcagagctgcgatcattaactagtgcgaactatttgaagtagcattcatttctgtattggttttcttgaccttgtttttag

upper sequence: GLYMA09G40480.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 2
TGCTTCGTTTTCTACAGAAGCTTTGTGATGATTCACAGATATTGGTAGACATTTTTATCAACTATGACTGTGATGTCAATTCAACAAACATATTTGAGAGgtttgctatgttttgttttatttggtattctctatgaataatttgttttatttta-catttataatt-tataatatggatccccattccccagtttattatc--
||||||| |||||| |||| || |||| |||||||||||| || |||||||| || ||||| ||||| ||||||||||||||| |||||||||| ||||||| ||   ||||| ||||| |||| |      ||  |||| |   || ||    | || || |  || || || ||         |  |  || |  || |   
TGCTTCGGTTTCTAGAGAAACTCTGTGTTGATTCACAGATTTTAGTAGACATATTCATCAATTATGATTGTGATGTCAATTCATCAAACATATTCGAGAGgtatgtcctgtttggttttttttgttg----atacaaatattcaattatacaaaagcacttctggttgtaaaaaatttcagttggtggcaaagctctttgttac