1 5' 3' | 2 5' 3' | 3 5' 3' |
GAAGTCTGAGGCAGAGAAGGCCAATAGGCTCAAAACAGCTTACACTGAGAAAATTATTCCCTTGCTCATGGAAGAGTTCTCCTACACCAACAAACACCAGgttttttaccaaattttgtaacttttgtttaatgttttttctaacattgtttggctgtgaaagtttgaatctttgttggttttgggttggtggggttctg...
species | Glycine max |
transcript | GLYMA09G39130.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAATTATTCCCTTGCTCATGGAAGAGTTCTCTTACACCAACAAACACCAG GTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATTGGAGATGCTGCGEST: gi|208106303|gb|GD905980.1|GD905980
genomic: AAATTATTCCCTTGCTCATGGAAGAGTTCTCCTACACCAACAAACACCAGgttttttacc ... ttcatttcagGTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATCGGAGATGCTGCA
EST: AAATTATTCCCTTGCTCATGGAAGAGTTCTCCTACACCAACAAACACCAG GTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATCGGAGACGCTGCAEST: gi|207732718|gb|GD704811.1|GD704811
genomic: AAATTATTCCCTTGCTCATGGAAGAGTTCTCCTACACCAACAAACACCAGgttttttacc ... ttcatttcagGTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATCGGAGATGCTGCA
EST: AAATTATTCCCTTGCTCATGGAAGAGTTCTCTTACACCAACAAACACCAG GTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATTGGAGATGCTGCG
genomic: AAATTATTCCCTTGCTCATGGAAGAGTTCTCCTACACCAACAAACACCAGgttttttacc ... ttcatttcagGTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATCGGAGATGCTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTCTGAGGCAGAGAAGGCCAATAGGCTCAAAACAGCTTACACTGAGAAAATTATTCCCTTGCTCATGGAAGAGTTCTCCTACACCAACAAACACCAGgttttttaccaaattttgtaacttttgtttaatgttttttctaacattgtttggctgtgaaagtttgaatctttgttggttttgggttggtggggttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgggg