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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAAgtaagcatccgttgcatatttgttgtttcgttcgattcgattggattgttgatagaactgaattgaatgcattgaaactggaaatgaatgtttcatgtttgtgtgctttttttgtgaacag

Basic information

species Glycine max
transcript GLYMA09G38640.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208096471|gb|GD892164.1|GD892164
EST:     ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAA                         ATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGAC
genomic: ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAAgtaagcatcc ... ttgtgaacagATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGAC
EST: gi|192297697|gb|FG992775.1|FG992775
EST:     ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAA                         ATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGAC
genomic: ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAAgtaagcatcc ... ttgtgaacagATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGAC
EST: gi|26045883|gb|CA783315.1|CA783315
EST:     ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAA                         AATGCATTGAATGGTATAGAGTTTGATTCGATCCTTTCTCTTGGCTTGGAC
genomic: ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAAgtaagcatcc ... ttgtgaacagATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGAC
EST: gi|21889576|gb|BQ742789.1|BQ742789
EST:     ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAA                         ATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGAC
genomic: ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAAgtaagcatcc ... ttgtgaacagATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGAC
EST: gi|151405478|gb|EV275292.1|EV275292
EST:     ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAA                         ATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCCTGGAC
genomic: ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAAgtaagcatcc ... ttgtgaacagATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGAC
EST: gi|26269289|gb|CA820352.1|CA820352
EST:     ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAA                         ATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGAC
genomic: ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAAgtaagcatcc ... ttgtgaacagATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGAC
EST: gi|298196962|gb|HO041705.1|HO041705
EST:     ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAA                         ATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGAC
genomic: ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAAgtaagcatcc ... ttgtgaacagATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGAC
EST: gi|7233753|gb|AW569096.1|AW569096
EST:     ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAA                         ATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGAC
genomic: ACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAAgtaagcatcc ... ttgtgaacagATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAAgtaagcatccgttgcatatttgttgtttcgttcgattcgattggattgttgatagaactgaattgaatgcattgaaactggaaatgaatgtttcatgtttgtgtgctttttttgtgaacag

- - - - - - - - - -  AAGGAA
- - - - - - - - - - -  GGAAGA