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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCACGGAGAGCCTGCGCCTCGGAACAGTCATCCTCAGACCTCTGGTCCTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAGgtaacgttctctctcatacactctaaattaaacgcctaatgatgccactctgttgtggctagtgctgtacgttttatctctctgttcgttgtttctcagatattattgtgtgttcag

Basic information

species Glycine max
transcript GLYMA09G38460.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298174041|gb|HO017377.1|HO017377
EST:     CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAG                         GTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACT
genomic: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAGgtaacgttct ... gtgtgttcagGTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACT
EST: gi|298173459|gb|HO016795.1|HO016795
EST:     CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAG                         GTTTTGAAGGAAACGCTGCTCCGACATGGTTTCACCTTTGAATCTGAAACT
genomic: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAGgtaacgttct ... gtgtgttcagGTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACT
EST: gi|213620145|gb|DB965423.1|DB965423
EST:     CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAG                         GTTTTGAAGGAAACGCCGCTCCGACATGGCTTCACCTTTGAATCTGAAACT
genomic: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAGgtaacgttct ... gtgtgttcagGTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACT
EST: gi|209696470|gb|BW664019.1|BW664019
EST:     CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAG                         GTTTTGAAGGAAACGCCGCTCCGACATGGCTTCACCTTTGAATCTGAAACT
genomic: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAGgtaacgttct ... gtgtgttcagGTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACT
EST: gi|213618097|gb|DB965254.1|DB965254
EST:     CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAG                         GTTTTGAAGGNAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAGACT
genomic: CTGGTAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAGgtaacgttct ... gtgtgttcagGTTTTGAAGGAAACGCTGCTCCGACATGGCTTCACCTTTGAATCTGAAACT