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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAGgtaaacactcttcccttcgcttctacactttttatgtatgttctcaaatatgattttggtgaagaggccaatttatagtgaaaattgtggacttgtaatc...

Basic information

species Glycine max
transcript GLYMA09G38440.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348210|gb|BI973805.1|BI973805
EST:     CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG                         GTTGCCCTTGATAGTTCCTCAAATGCTACTCCTCCTATCAAAGCCAAATCA
genomic: CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAGgtaaacactc ... ctacaacaagGTTGCCCTTGATAGTTCCTCAAATGCTACTCCTCCTATCAAAGCCAAATCA
EST: gi|213605948|gb|DB956648.1|DB956648
EST:     CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG                         GTTGCCCTTGATAGTTCCTCAAATGCTACTCCTCCTATCAAAGCCAAATCA
genomic: CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAGgtaaacactc ... ctacaacaagGTTGCCCTTGATAGTTCCTCAAATGCTACTCCTCCTATCAAAGCCAAATCA
EST: gi|8670260|gb|BE191367.1|BE191367
EST:     CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG                         GTTGCCCTTGATAGTTCCTCAAATGCTACTCCTCCTATCAAAGCCAAATCA
genomic: CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAGgtaaacactc ... ctacaacaagGTTGCCCTTGATAGTTCCTCAAATGCTACTCCTCCTATCAAAGCCAAATCA
EST: gi|213604876|gb|DB956161.1|DB956161
EST:     CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG                         GTTGCCCTTGATAGTTCCTCAAATGCTACTCCTCCTATCAAAGCCAAATCA
genomic: CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAGgtaaacactc ... ctacaacaagGTTGCCCTTGATAGTTCCTCAAATGCTACTCCTCCTATCAAAGCCAAATCA
EST: gi|209714756|gb|BW654106.1|BW654106
EST:     CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG                         GTTGCCCTTGATAGTTCCTCAAATGCTACTCCTCCTATCAAAGCCAAATCA
genomic: CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAGgtaaacactc ... ctacaacaagGTTGCCCTTGATAGTTCCTCAAATGCTACTCCTCCTATCAAAGCCAAATCA
EST: gi|6134057|gb|AW132386.1|AW132386
EST:     CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG                         GTTGCCCTTGATAGTTCCTCAAATGCTACTCCTCCTATCAAAGCCAAATCA
genomic: CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAGgtaaacactc ... ctacaacaagGTTGCCCTTGATAGTTCCTCAAATGCTACTCCTCCTATCAAAGCCAAATCA
EST: gi|120529588|gb|EH257722.1|EH257722
EST:     CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG                         GTTGCCCTTGATAGTTCCTCAAATGCTACTCCTCCTATCAAAGCCAAATCA
genomic: CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAGgtaaacactc ... ctacaacaagGTTGCCCTTGATAGTTCCTCAAATGCTACTCCTCCTATCAAAGCCAAATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAGgtaaacactcttcccttcgcttctacactttttatgtatgttctcaaatatgattttggtgaagaggccaatttatagtgaaaattgtggacttgtaatc

- - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc