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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCACCTGAAGAGTCCACTGCACCTTACCATTCCATCACCTTACCTGAGACTTTTGATCTTGATGATTTTGAGCTACCAGATAATGACATTCTTCAAGGgttagttcctaattatatgattatttgtagctttagctattgcttactgcagtgacatttttacttaagttggtttttatataattcaatttgcttcatt...

Basic information

species Glycine max
transcript GLYMA09G38310.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38310.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G16270.1 (Arabidopsis thaliana), 5'ss of exon 3
TGCCACCTGAAGAGTCCACTGCACCTTACCATTCCATCACCTTACCTGAGACTTTTGATCTTGATGATTTTGAGCTACCAGATAATGACATTCTTCAAGGgttagttcctaattatatgattatttgtagctttagctattgcttactgcagtg-acatttttacttaagttggtttttatataattcaatttgcttcatt
| || |||||||| || || || || || || || || || || || ||||| |||||||||||||| |||||||| ||||| ||||| ||  |||| ||||| ||| ||   | | | |  |||   |    ||       |||||| || |   |||  ||  || | ||| ||  |   |  ||   | |    ||  
TACCCCCTGAAGAATCTACAGCGCCGTATCACTCTATTACGTTGCCAGAGACATTTGATCTTGATGACTTTGAGCTTCCAGACAATGAGATCTTTCAGGGgttggtttctttatgttttaacattcaaactcgtattccactcttactccaatttgcataatttgtttatttg-ttgctccttgttttcctgtctagcag-

upper sequence: GLYMA09G38310.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0220g00080.t01 (Vitis vinifera), 5'ss of exon 2
TGCCACCTGAAGAGTCCACTGCACCTTACCATTCCATCACCTTACCTGAGACTTTTGATCTTGATGATTTTGAGCTACCAGATAATGACATTCTTCAAGGgttagttcctaattatatgattatttgtagctttagctattgcttactgcagtgacatttttacttaagttggtttttatataattcaatttgcttcatt----
| || || ||||| || || ||||| || || ||||||||||| || ||||| |||||||||||||| |||||||| ||||||||||| ||| ||||||||| |||||| ||   |||  | |||||||  || |||||  | |||   |  ||  ||      ||   ||  | | | ||||||| |     | |  ||    
TACCTCCAGAAGAATCTACAGCACCATATCACTCCATCACCTTGCCAGAGACATTTGATCTTGATGACTTTGAGCTGCCAGATAATGATATTTTTCAAGGgtcagttccaaacattat--tcatttgtattttaagctaaagattaagtc--tggtatgcaccattttttttttgtatctataatttagaaaacattgttgata