1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AAATGGGTGTGGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcgtttctatttaactattttgcgttagttttgctattatgattgtggatgtattcaccagtgtttgataaatctagaaaactctatgtttga...
species | Glycine max |
transcript | GLYMA09G38110.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGEST: gi|298183011|gb|HO028274.1|HO028274
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
EST: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGEST: gi|213617416|gb|DB965231.1|DB965231
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
EST: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGEST: gi|6567285|gb|AW234896.1|AW234896
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
EST: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGEST: gi|5342420|gb|AI794704.1|AI794704
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
EST: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGEST: gi|213607123|gb|DB967000.1|DB967000
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
EST: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGEST: gi|10709431|gb|BF009155.1|BF009155
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
EST: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAAEST: gi|213592755|gb|DB957813.1|DB957813
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGAT-AAA
EST: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGEST: gi|213602215|gb|DB958475.1|DB958475
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
EST: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGG AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
genomic: GGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcg ... tgtgctgcagAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGGGTGTGGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGgtgagtatcgtttctatttaactattttgcgttagttttgctattatgattgtggatgtattcaccagtgtttgataaatctagaaaactctatgtttga
- - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - GGAGAT