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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttttttttttttaatctttcaatttttgtggcacaaacacaatgcatggaatgggtatttgttttgctgttgggtttgttattggatgttctt...

Basic information

species Glycine max
transcript GLYMA09G37570.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G37570.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G150616_T01 (Zea mays), 5'ss of exon 2
ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgtttttttttttt----aatctttcaatttttgtggcacaaacacaatgcatggaatgggtatttgttttgctgttgggtttgttattggatgttctt
||||||||| |||||||||||| | |||||| ||||||||| |||| |||||| |  ||| ||| || || |||| ||   |   ||    ||     |  ||  | | |  ||    |  | | |  | | ||   ||| |||| || |   |  |   | | |||     
ATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgcttcgctccgtttcggaacaccccgtttcctcttgttcagcttcggtccttttactagggcgttgctttg-tgctttctccggactggaatgaa---

upper sequence: GLYMA09G37570.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G155021_T01 (Zea mays), 5'ss of exon 2
ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgtttttttt-ttttaatctttcaatttttg-----tggcacaaacacaatgcatggaatgggtatttgttttgctgttgggtttgttattggatgttctt
||||||||| |||||||||| |||   ||||||||||| || ||||||||| ||| |||| ||| || |||||||     |   |  |||||  |||   |||      |  |   | | |    |     | |         |||  |   |   |  ||| ||||       
ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCTGCTCCCCCAATGGCGTCgtgagtgccccctccctcctaatcaatcaccatttcctcctttacctgagcgcgcctccccagaggacaccgcactttatttgcgtagtccttagtggag------

upper sequence: GLYMA09G37570.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G115049_T01 (Zea mays), 5'ss of exon 2
ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgtttttt---ttttttaatctttcaatttttgtggcacaaacacaatgcatggaatgggtatttgttttgctgt-tgggtttgttattggatgttctt
|||| || |  |||||||||||||  ||||||||||||||  ||||||||||| |  |||  |||| ||||||| |    |    | |    | |||   ||||||||       |    | |           |||||   || ||  | |||  | | ||    ||    
ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttccactcgactctccggtattt--gtttttgtgatgtcgccttgttactcttggccttgatttgacatgatgcataggtaggctttttttagtgg--

upper sequence: GLYMA09G37570.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G146670_T01 (Zea mays), 5'ss of exon 2
ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgtttt--ttttttttaatctttcaatttttgtggcacaaacacaatgcatggaatgggtat-ttgttttgctgttgggtt-tgttattggatgttctt
||||||||| |||||||||||| |  ||||| ||||||||| |||| ||||||    ||| ||| ||||| |||  |    |  |||  || |   |    | |   ||||   | ||      |   | |   |  ||  ||||| |   ||  | |  | |||       
ATCTGCTGTACAAGGACTACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctccgctcctttcaaaacacccctcctcttccgcacttcctcagcctcggtcctcgtggtactgcgttgctttgcagtgatttcgtcggactg----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600252|gb|DB970272.1|DB970272
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|16347641|gb|BI973236.1|BI973236
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|298172878|gb|HO019862.1|HO019862
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|298168049|gb|HO013312.1|HO013312
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|298191276|gb|HO038755.1|HO038755
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|151411944|gb|EV281755.1|EV281755
EST:     ACCACAGTGACCAGAAGTTCACCATCACCA-C--CTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|42723151|gb|CK769050.1|CK769050
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|10709348|gb|BF009072.1|BF009072
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|38193301|gb|CF922507.1|CF922507
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|5770466|gb|AI973640.1|AI973640
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGGT
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGAT-GT
EST: gi|16347660|gb|BI973263.1|BI973263
EST:     ACCACTTTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|207763255|gb|GD735208.1|GD735208
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|15813714|gb|BI785989.1|BI785989
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCGACTGGAGTT                         GCTATTACAGCATCAGGAACCAGGAAAAGTGAACTGTTTCTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|18040621|gb|BM308915.1|BM308915
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|192299447|gb|FG990785.1|FG990785
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|192325787|gb|FK018009.1|FK018009
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|5605752|gb|AI899816.1|AI899816
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|10236169|gb|BE805057.1|BE805057
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|209713320|gb|BW684407.1|BW684407
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|298163169|gb|HO011902.1|HO011902
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|298173735|gb|HO017071.1|HO017071
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|298180228|gb|HO025443.1|HO025443
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|4260342|gb|AI416838.1|AI416838
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|193669653|gb|FK613639.1|FK613639
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|16346024|gb|BI971619.1|BI971619
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGATCCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|15813668|gb|BI785943.1|BI785943
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCGACTGGAGTT                         GCTATTACAGCATCAGGAACCAGGAAAAGTGAACTGTTTCTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|10845230|gb|BF068391.1|BF068391
EST:     CAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: CAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|13477601|gb|BG507417.1|BG507417
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|298188638|gb|HO035331.1|HO035331
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|193419157|gb|FK381841.1|FK381841
EST:     ATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|27425671|gb|CA937191.1|CA937191
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|10847550|gb|BF070219.1|BF070219
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCGACTGGAGTT                         GCTATTACAGCATCAGGAACCAGGAAAAGTGAACTGTTTCTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|6455596|gb|AW186279.1|AW186279
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|26045822|gb|CA783291.1|CA783291
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|37997016|gb|CF808605.1|CF808605
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|16347806|gb|BI973401.1|BI973401
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|48574785|gb|CO036076.1|CO036076
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|7588768|gb|AW704556.1|AW704556
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|151404231|gb|EV274041.1|EV274041
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|38192679|gb|CF921885.1|CF921885
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
EST: gi|192329007|gb|FK019706.1|FK019706
EST:     ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT                         GCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC
genomic: ACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttt ... tctgcttcagGCTATAACAGCATCAGGAACCAGGAAAAGTGAACTGTTTGTGGCTGATGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgttttttttttttaatctttcaatttttgtggcacaaacacaatgcatggaatgggtatttgttttgctgttgggtttgttattggatgttctt

- - - - - - - - - - - - - - - AGAAGT