1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGAGCTTCAAGAAATTCAGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactccttcttatgacttcttatatacttctgctgtttcttggagcctttcattccgttggatgttctattactttttcttttgctctatttttttttataacagatattgagatggtcttcatgcccttttctcaaacagcttcctcttattttgtag
species | Glycine max |
transcript | GLYMA09G36770.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATTEST: gi|4300666|gb|AI443080.1|AI443080
genomic: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: GGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATTGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTTGAATEST: gi|9987763|gb|BE661871.1|BE661871
genomic: GGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACAT-GGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAAT
EST: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATTEST: gi|193519696|gb|FK477141.1|FK477141
genomic: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAACTAAAAACGCTGAACTTGGAATTEST: gi|298165597|gb|HO011646.1|HO011646
genomic: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATTEST: gi|19270747|gb|BM887003.1|BM887003
genomic: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATTEST: gi|15813355|gb|BI785630.1|BI785630
genomic: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACTTGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATTEST: gi|13791409|gb|BG654000.1|BG654000
genomic: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: ATGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAG GTTCGCATTCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATTEST: gi|298195324|gb|HO039155.1|HO039155
genomic: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: ATGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAG GTTCGCATGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATTEST: gi|298181545|gb|HO025720.1|HO025720
genomic: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATTEST: gi|27424921|gb|CA936441.1|CA936441
genomic: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATTEST: gi|298164288|gb|HO013933.1|HO013933
genomic: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATTEST: gi|5753292|gb|AI960579.1|AI960579
genomic: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATTEST: gi|254342695|gb|GR858857.1|GR858857
genomic: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATTEST: gi|21285677|gb|BQ473548.1|BQ473548
genomic: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: CAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATTEST: gi|15336929|gb|BI497585.1|BI497585
genomic: CAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: AAAATCTTCTTACACATGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATTEST: gi|151400607|gb|EV270421.1|EV270421
genomic: AAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
EST: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAG GTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
genomic: AGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactcctt ... tattttgtagGTTCGCAGGCTTAGGATACAACAAAGAATTAAAAACGCTGAACTTGGAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGAGCTTCAAGAAATTCAGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGgtcactccttcttatgacttcttatatacttctgctgtttcttggagcctttcattccgttggatgttctattactttttcttttgctctatttttttttataacagatattgagatggtcttcatgcccttttctcaaacagcttcctcttattttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA