1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTGGTGCTTTGTTGAGTACCCTATCCATTCGCCTCGGTTACAAGTTAAAGCAGGCAGTCGACTCCAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAGgtccttatgtactgtttgggggacaccattctcccccttctgcgtttaatttttttatcctaagtgggaaaataaactcaacttaatagtcaaaatggtttagtgcctttgtctattgtggattcttacttcatattatttgttactacag
species | Glycine max |
transcript | GLYMA09G35690.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAGGCAGTCGACTCCAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAG GAAATGGAAAATCCACCCACACAAAAAACTCCACAGATTGCTTTATGCAGTEST: gi|213595238|gb|DB963971.1|DB963971
genomic: GCAGGCAGTCGACTCCAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAGgtccttatgt ... gttactacagGAAATGGAAAATCCACCCACACAAAAAACTCCACAGATTGCTTTATGCAGT
EST: GCAGGCAGTCGACTCCAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAG GAAATGGAAAATCCACCCACACAAAAAACTCCACAGATTGCTTTATGCAGTEST: gi|298175382|gb|HO015015.1|HO015015
genomic: GCAGGCAGTCGACTCCAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAGgtccttatgt ... gttactacagGAAATGGAAAATCCACCCACACAAAAAACTCCACAGATTGCTTTATGCAGT
EST: GCAGGCAGTCGACTCCAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAG GAAATGGAAAATCCACCCACACAAAAAACTCCACAGATTGCTTTATGCAGTEST: gi|192332661|gb|FK025318.1|FK025318
genomic: GCAGGCAGTCGACTCCAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAGgtccttatgt ... gttactacagGAAATGGAAAATCCACCCACACAAAAAACTCCACAGATTGCTTTATGCAGT
EST: GCAGGCAGTCGACTCCAAGCCGAAGCAAAATGCAACTAC---T------G GAAATGGAAAATCCACCCACACAAAAAACTCCACAGATTGCTTTATGCAGT
genomic: GCAGGCAGTCGACTCCAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAGgtccttatgt ... gttactacagGAAATGGAAAATCCACCCACACAAAAAACTCCACAGATTGCTTTATGCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGTGCTTTGTTGAGTACCCTATCCATTCGCCTCGGTTACAAGTTAAAGCAGGCAGTCGACTCCAAGCCGAAGCAAAATGCAACTACTGGTCAGAAAGgtccttatgtactgtttgggggacaccattctcccccttctgcgtttaatttttttatcctaagtgggaaaataaactcaacttaatagtcaaaatggtttagtgcctttgtctattgtggattcttacttcatattatttgttactacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA