1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGCCAAGAAATTTGGAGCAACGAGCGTAGGCATTACTCTGAGTCCTGTTCAAGCTCAAAGAGCAAATTCTCTTGCTGCTGCTCAAGGATTGGCTGACAAGgtcttcatttctcgaaatgcatgtttttcatttctagtaccgaggttattaataacatgctacagaatctctgcacatgtagctagtagtactttaaggtttttaatttctagtatctattttacacatgtttttaatttccagtatttgctttcatgtgtacgtacgtctgtaattgcag
species | Glycine max |
transcript | GLYMA09G35680.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGCTCAAAGAGCAAATTCTCTTGCTGCTGCTCAAGGATTGGCTGACAAG GTTTCCTTTGAGGTTGCTGACGCCCTAAAGCAACCATTCCCTGACGGGAAGEST: gi|298185107|gb|HO030320.1|HO030320
genomic: AAGCTCAAAGAGCAAATTCTCTTGCTGCTGCTCAAGGATTGGCTGACAAGgtcttcattt ... gtaattgcagGTTTCCTTTGAGGTTGCTGACGCCCTAAAGCAACCATTCCCTGACGGGAAG
EST: AAGCTCAAAGAGCAAATTCTCTTGCTGCTGCTCAAGGATTGGCTGACAAG GTTTCCTTTGAGGTTGCTGACGCCCTAAAGCAACCATTCCCTGACGGGAAG
genomic: AAGCTCAAAGAGCAAATTCTCTTGCTGCTGCTCAAGGATTGGCTGACAAGgtcttcattt ... gtaattgcagGTTTCCTTTGAGGTTGCTGACGCCCTAAAGCAACCATTCCCTGACGGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCAAGAAATTTGGAGCAACGAGCGTAGGCATTACTCTGAGTCCTGTTCAAGCTCAAAGAGCAAATTCTCTTGCTGCTGCTCAAGGATTGGCTGACAAGgtcttcatttctcgaaatgcatgtttttcatttctagtaccgaggttattaataacatgctacagaatctctgcacatgtagctagtagtactttaaggtttttaatttctagtatctattttacacatgtttttaatttccagtatttgctttcatgtgtacgtacgtctgtaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT