Sequence
atgc intronic sequence ATGC exonic sequenceGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAATGTTGAAGTTAATgtaatgcgttctactttaatcaattggacatgcaaagccttcttattcctagacttgttttgttttgatcggtttctgtaatgcacgagcttctttgtaa...
Basic information
species | Glycine max |
transcript | GLYMA09G33950.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G33950.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G46860.1 (Arabidopsis thaliana), 5'ss of exon 2
GCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAATGTTGAAGTTAATgtaatgcg---ttctactttaatcaattggacatgcaaagccttcttattcctagacttgttttgttttgatcggtttctgtaatgcacgagcttctttgtaa
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GCACAAGACAAGGTTGCATATTGGACAGCTTGTGAAGGATACTTCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGCGGTGTCAATgtaaagtggaatctttttcttcttgtttggtttttaagcgactctttgtt-----gtgtgtttgattgttgtgtaattgtgtag-------------------
upper sequence: GLYMA09G33950.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0012g01850.t01 (Vitis vinifera), 5'ss of exon 2
GCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAATGTTGAAGTTAATgtaa---tgcgttc-tactttaat-caattggacatgcaaagccttcttattcctagacttgttttgttttgatcggtttctgtaatgcacgagcttctttgtaa
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GCACAAGACGAGGCTACATATTGGGCAGTTAGTCAAGGATACCTCTGCTAAACTTAAGCAAGCTAGCGAAACAGATCATCATGCTGAAGTTAGTgtaagtttgctttcatgatacgatactattgattttgcaagaatttctctctccctttcttactatttatttgtactcagcaattgtg-gcaaacttatca----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254315437|gb|GR825246.1|GR825246EST: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAATGTTGAAGTTAAT ACAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTT-CAGGCGGTG
genomic: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAATGTTGAAGTTAATgtaatgcgtt ... gtatttgcagACAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAATGTTGAAGTTAATgtaatgcgttctactttaatcaattggacatgcaaagccttcttattcctagacttgttttgttttgatcggtttctgtaatgcacgagcttctttgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG