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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataagctgattataaatgatatcatcatttataattcatgtttcatgcaatagacttttggatttgacacatgtaacattgagcttattccaatgcacttgtaattcatgatgttttcgattgagaatgttgccttttgctgtggccaaag

Basic information

species Glycine max
transcript GLYMA09G33480.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208169672|gb|GD967801.1|GD967801
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGACACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|193605296|gb|FK558136.1|FK558136
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|193422559|gb|FK390172.1|FK390172
EST:     TCTTTAGACCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: TCTTT-G-CCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|208315715|gb|GE114785.1|GE114785
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGACCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|193518136|gb|FK473551.1|FK473551
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAA
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAA
EST: gi|193401889|gb|FK367094.1|FK367094
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|208248208|gb|GE050762.1|GE050762
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|208102749|gb|GD897490.1|GD897490
EST:     CCTCTTTGCCCGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCC
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCC
EST: gi|193721890|gb|FK659438.1|FK659438
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|208341502|gb|GE137070.1|GE137070
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAAAT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAA-T
EST: gi|193515317|gb|FK472879.1|FK472879
EST:     AAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: AAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|208165341|gb|GD964449.1|GD964449
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATAT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATAT
EST: gi|208303241|gb|GE101062.1|GE101062
EST:     CTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|208046547|gb|GD849103.1|GD849103
EST:     CCTCTTTGCCTGCTGAAGTTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|193730758|gb|FK666138.1|FK666138
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGTAGGTT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTG-AGGTT
EST: gi|208172749|gb|GD969352.1|GD969352
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|207808489|gb|GD777662.1|GD777662
EST:     CTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|208165683|gb|GD964133.1|GD964133
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|193540875|gb|FK496051.1|FK496051
EST:     CCTCTTTGCCTGCTGAAGCTGCGTTCGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|193636308|gb|FK584009.1|FK584009
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|208178075|gb|GD975732.1|GD975732
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|207833163|gb|GD801382.1|GD801382
EST:     CCTCTTTGCCCGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|208286694|gb|GE085268.1|GE085268
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|208325102|gb|GE124020.1|GE124020
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
EST: gi|208138614|gb|GD939746.1|GD939746
EST:     CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG                         GAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT
genomic: CCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataa ... gtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGgtatatataagctgattataaatgatatcatcatttataattcatgtttcatgcaatagacttttggatttgacacatgtaacattgagcttattccaatgcacttgtaattcatgatgttttcgattgagaatgttgccttttgctgtggccaaag

- - - - - -  CTGAAG
- - - - - - - TGAAGC
- - - - - - - - AAGCTG
- - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - AAGCTG