1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATCAAAAAATCCTGGTCTTGCTCCAAACAAAGAAAGAGGCATTGGCTTGATGTGGGGTCCTGATTGTACTGAAGAATTTTTGAAGAAATACCAACTAAAGgtaataaaataagttacttttaatgttatggtgatgtgtttgattgtcttggtggaatatatcaattctaggctaagttaacatataaaatctatagaat...
species | Glycine max |
transcript | GLYMA09G32830.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTGGGGTCCTGATTGTACTGAAGAATTTTTGAAGAAATACCAACTAAAG TTGATCATCAGGTCACATGAAGGTCCTGATGCTAGGGAAAAAAGGGATGGTEST: gi|7640032|gb|AW734342.1|AW734342
genomic: TGTGGGGTCCTGATTGTACTGAAGAATTTTTGAAGAAATACCAACTAAAGgtaataaaat ... taattttcagTTGATCATCAGGTCACACGAAGGTCCTGATGCTAGGGAAAAAAGGGATGGT
EST: TGTGGGGTCCTGATTGTACTGAAGAATTTTTGAAGAAATACCAACTAAAG TTGATCATCAGGTCACACGAAGGTCCTGATGCTAGGGAAAAAAGGGATGGTEST: gi|120494761|gb|EH222928.1|EH222928
genomic: TGTGGGGTCCTGATTGTACTGAAGAATTTTTGAAGAAATACCAACTAAAGgtaataaaat ... taattttcagTTGATCATCAGGTCACACGAAGGTCCTGATGCTAGGGAAAAAAGGGATGGT
EST: TGT--GGTCCTGATTGTACTGAAGAATTTTTGAAGAAATACCAACTAAAG TTGATCATCAGGTCACACGAAGGTCCTGATGCTAGGGAAAAAAGGGATGGTEST: gi|120495101|gb|EH223268.1|EH223268
genomic: TGTGGGGTCCTGATTGTACTGAAGAATTTTTGAAGAAATACCAACTAAAGgtaataaaat ... taattttcagTTGATCATCAGGTCACACGAAGGTCCTGATGCTAGGGAAAAAAGGGATGGT
EST: GTCCTGATGGTACTGAAGAATTTTTGAAGAAATTCCCACTAAAG TTGATCATCAGGTCACCCGAAGGTCCTGATGCTAGGGAAAAAAGGGATGGT
genomic: GTCCTGATTGTACTGAAGAATTTTTGAAGAAATACCAACTAAAGgtaataaaat ... taattttcagTTGATCATCAGGTCACACGAAGGTCCTGATGCTAGGGAAAAAAGGGATGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAAAAAATCCTGGTCTTGCTCCAAACAAAGAAAGAGGCATTGGCTTGATGTGGGGTCCTGATTGTACTGAAGAATTTTTGAAGAAATACCAACTAAAGgtaataaaataagttacttttaatgttatggtgatgtgtttgattgtcttggtggaatatatcaattctaggctaagttaacatataaaatctatagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggtgg