Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCATAAACCCCACAACAACCCCAAACCCTTCACTCTTTCGATTTTCGAAGgtatatcctttctcgatcaacttgattttcgattctatttttgtccaaattgttgagaattttccgaaaattcgattaatgttcttccctcgattgattccggattacgtgtttgcgttcaattacttgacgttacttgcatttgcaacatttctgttcaattag

Basic information

species Glycine max
transcript GLYMA09G30410.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26059988|gb|CA802902.1|CA802902
EST:     TAAACCCCACAACAACCTTAAACCCTTCACTCTTTCGATTTTCGAAG                         GTAAAAAGATGAATCTGAAGAACATGAAGGTTCCGAACGTTCCAGGTGGCG
genomic: TAAACCCCACAACAACCCCAAACCCTTCACTCTTTCGATTTTCGAAGgtatatcctt ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGGTTCCGAACGTTCCAGGTGGCG
EST: gi|33388681|gb|CA851888.1|CA851888
EST:     CACTCTTTCGATTTTCGAAG                         GTAAAAAGATGAATCTGAAGAACATGAAGGNTCCGAACGTTCCAGGTGGCG
genomic: CACTCTTTCGATTTTCGAAGgtatatcctt ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGGTTCCGAACGTTCCAGGTGGCG
EST: gi|151410209|gb|EV280024.1|EV280024
EST:     ACAACAACCCCAAACCCTTCACTCTTTCGATTTTCGAAG                         GTAAAAAGATGAATCTGAAGAACATGAAGGTTCCGAACGTTCCAGGTGGCG
genomic: ACAACAACCCCAAACCCTTCACTCTTTCGATTTTCGAAGgtatatcctt ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGGTTCCGAACGTTCCAGGTGGCG
EST: gi|151411498|gb|EV281309.1|EV281309
EST:     ACTCTTTCGATTTTCGAAG                         GTAAAAAGATGAATCTGAAGAACATGAAGGTTCCGAACGTTCCAGGTGGCG
genomic: ACTCTTTCGATTTTCGAAGgtatatcctt ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGGTTCCGAACGTTCCAGGTGGCG
EST: gi|254318421|gb|GR832589.1|GR832589
EST:     AAACCCCACAACAACCCCAAACCCTTCACTCTTTCGATTTTCGAAG                         GTAAAAAGATGAATCTGAAGAACATGAAGGTTCCGAACGTTCCAGGTGGCG
genomic: AAACCCCACAACAACCCCAAACCCTTCACTCTTTCGATTTTCGAAGgtatatcctt ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGGTTCCGAACGTTCCAGGTGGCG
EST: gi|192332492|gb|FK024253.1|FK024253
EST:     ACAACAACCCCAAACCCTTCACTCTTTCGATTTTCGAAG                         GTAAAAAGATGAATCTGAAGAACATGAAGGTTCCGAACGTTCCAGGTGGCG
genomic: ACAACAACCCCAAACCCTTCACTCTTTCGATTTTCGAAGgtatatcctt ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGGTTCCGAACGTTCCAGGTGGCG
EST: gi|208214207|gb|GE015478.1|GE015478
EST:     GCATAAACCCCACAACAACCCCAAACCCTTCACTCTTTCGATTTTCGAAG                         GTAAAAAGATGAATCTGAAGAACATGAAGGTTCCGAACGTTCCAGGTGGCG
genomic: GCATAAACCCCACAACAACCCCAAACCCTTCACTCTTTCGATTTTCGAAGgtatatcctt ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGGTTCCGAACGTTCCAGGTGGCG