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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTATATGGTTTTGCCATATGCTTTGCTTCTGGATTAACTTGTACGCTATTGgtaagtttgacattttgatttttttgttagataagtgaagcttatatgccagttcttcagttcaatgtagaatattaatcttcagctgccttgaatcttt...

Basic information

species Glycine max
transcript GLYMA09G28470.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G28470.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0130g00230.t01 (Vitis vinifera), 5'ss of exon 2
AGACTATATGGTTTTGCCATATGCTTTGCTTCTGGATTAACTTGTACGCTATTGgtaagtttgacattttgatttttttgttagataagtgaagcttatatgccagttcttcagttcaatgtagaatattaatcttcagctgccttgaatcttt----
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AGATTTTATGGTTTTGCCATATGCTTGGCTGCTGGTTTAACTTGTACACTCTTGgtaagttcagtcattgaatactttcagtccatctttta--tttcattgtcagttatcatatgttttctggttttcta--tattgttggttttaaaaattgaata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31306731|gb|CD391934.1|CD391934
EST:     TATATGGTTTTGCCATATGCTTTGCTTCTGGATTAACTTGTACGCTATTG                         TCTATGCTTGTTTTCTTCAAACCCATCAAGTTTGCGATAGCATTCACTCTT
genomic: TATATGGTTTTGCCATATGCTTTGCTTCTGGATTAACTTGTACGCTATTGgtaagtttga ... tatgttacagTCTATGCTTGTTTTCTTCAAACCAATCAAGTTTGCGATAGCATTCACTCTT