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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGAGTTGGCGGAGGACGGTTACTCCGGCGTGGAGGTTAGGGTTACGCCGATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgtttctgtaaccttccgttaaatttgtgggatcgaattttcattcataaattagttccatgaattgtgttgttttgattgtatatatag

Basic information

species Glycine max
transcript GLYMA09G28440.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G28440.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 2
CGTGAGTTGGCGGAGGACGGTTACTCCGGCGTGGAGGTTAGGGTTACGCCGATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgtt--tctgtaaccttccgttaaatttgtgggatcgaattttcattc-ataaattagttccatgaattgtgttgttttgattgtatatatag----
|| ||| | ||||||||||| ||||||||||| |||||  | || || || |||||||||||||| |||||| | |||||| | |||||   ||| ||||||| ||| ||   |  ||  | || | | |  |  |  |    |   || | | | ||  ||         |   | || || ||||  || ||          
CGCGAGCTCGCGGAGGACGGCTACTCCGGCGTCGAGGTCCGCGTCACCCCCATGCGCACCGAGATCATCATCCGCGCCACCCGCACCCAGAACGTCCTCGgtgagttcgtgagttcgtggcatttc-tgatctgggcagcgaggcgattccgtgcgatttatcccgggtgcgcgatctgatgctttggatgaatgcgatttcag

upper sequence: GLYMA09G28440.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 2
CGTGAGTTGGCGGAGGACGGTTACTCCGGCGTGGAGGTTAGGGTTACGCCGATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgtttctgtaaccttccgttaaatttgtgggatcgaattttcattcataaattagttccatgaattgtgttgttttgattgtatatatag
 | ||| | || ||||| |||||||| || || |||||||||||||| || ||| | || ||||||||||||||||| ||  | || ||    |||||||||  |||| |       | ||||     |  ||     |||   | |||  | |||   ||||       | |||     ||||||||||| |  ||
AGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCTATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt------gatcttc----gagctta----atcatttcttctattatacggtagt------gactgtaa-aatttgattgtattt-cag

upper sequence: GLYMA09G28440.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G31610.1 (Arabidopsis thaliana), 5'ss of exon 2
CGTGAGTTGGCGGAGGACGGTTACTCCGGCGTGGAGGTTAGGGTTACGCCGATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgtttctgtaaccttccgttaaatttgtgggatcgaattttcattcataaattagttccatgaattgtgttgttttgattgtatatatag
 | ||| | || ||||| |||||||| || || |||||||||||||| || ||| | || ||||||||||||||||| ||  | || ||    ||||| |||  ||||||||    | | || | |     ||  |   | |||| |   ||   | ||  | |     || |||   |||||              
AGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCAATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGgtatgtttgtttg---atcatttcttctctctttcgattttgaatgt--gtttcgagatctgatatcgaaaatgttgggttttag------------

upper sequence: GLYMA09G28440.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 2
CGTGAGTTGGCGGAGGACGGTTACTCCGGCGTGGAGGTTAGGGTTACGCCGATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgtttctgtaaccttccgttaaatttgtgggatcgaattttcattcataaattagttccatgaattgtgttgttttgattgtatatatag
 | ||| |||| ||||| || ||||| || || ||||||||||||||||| |||||||| || || ||||||||||||||  | || ||   |||||| ||||  |   |  || | |   | | || | || | |   ||  ||||   ||  |    |   ||      || || | ||| | || ||       
AGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaatggctttgattattc-ttgagttcgcgtt-tcagattt--gttggttttctgactctcctt-ttttgctttttggcttttag------

upper sequence: GLYMA09G28440.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ34676 (Selaginella moellendorffii), 5'ss of exon 2
CGTGAGTTGGCGGAGGACGGTTACTCCGGCGTGGAGGTTAGGGTTACGCCGATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgtttctgtaaccttccgttaaatttgtgggatcgaattttcattcataaattagttccatgaattgtgttgttttgattgtatatatag
|| ||| | |||||||| || ||||| |||||||||||  | || || |||||||||||||||||||||||| | || ||  |||| ||   |||| | |||   ||     ||||    |   |    |||       |  ||  ||   |  ||                                         
CGGGAGCTAGCGGAGGATGGATACTCGGGCGTGGAGGTGCGTGTCACACCGATGCGCACCGAGATTATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattc--ccctgt---ttctaggcggattcacttagtaaaagctttgattctag----------------------------------------

upper sequence: GLYMA09G28440.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ34304 (Selaginella moellendorffii), 5'ss of exon 2
CGTGAGTTGGCGGAGGACGGTTACTCCGGCGTGGAGGTTAGGGTTACGCCGATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgtttctgtaaccttccgttaaatttgtgggatcgaattttcattcataaattagttccatgaattgtgttgttttgattgtatatatag
|| ||||| || ||||| || ||||| |||||||||||  | || || ||||||||||||||||| |||||| | || ||  |||| ||   |||| | |||   ||  | | | |         || | || ||  | |   ||| |                                                 
CGGGAGTTAGCAGAGGATGGATACTCGGGCGTGGAGGTGCGTGTCACACCGATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcctctgtttctgggcggattcacttagtaagctttgattctag-----------------------------------------------

upper sequence: GLYMA09G28440.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ31296 (Selaginella moellendorffii), 5'ss of exon 2
CGTGAGTTGGCGGAGGACGGTTACTCCGGCGTGGAGGTTAGGGTTACGCCGATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgtttctgtaaccttccgttaaatttgtgggatcgaattttcattcataaattagttccatgaattgtgttgttttgattgtatatatag
|| ||||| |||||||| || ||||| |||||||||||  | || || |||||||||||||||||||||||| | || ||  |||| ||   |||| | |||    |  | | | |         || | |  ||  | |   ||| |                                                 
CGGGAGTTAGCGGAGGATGGATACTCGGGCGTGGAGGTGCGTGTCACACCGATGCGCACCGAGATTATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaactcctctgtttctaggcggattcactcagtaagctttgattctag-----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23058305|gb|BU578303.1|BU578303
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|12496516|gb|BG047103.1|BG047103
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|5677916|gb|AI939046.1|AI939046
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|33389542|gb|CA852749.1|CA852749
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCGAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|4291003|gb|AI441699.1|AI441699
EST:     ATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCNCGTTCT-G                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGG
genomic: ATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGC-CGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGG
EST: gi|12497107|gb|BG047401.1|BG047401
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCANAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|24205365|gb|BU964618.1|BU964618
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|8283729|gb|BE021288.1|BE021288
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|120496311|gb|EH224478.1|EH224478
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|4290831|gb|AI437533.1|AI437533
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|254325495|gb|GR838376.1|GR838376
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|192305912|gb|FG995462.1|FG995462
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|120496331|gb|EH224498.1|EH224498
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|151406004|gb|EV275819.1|EV275819
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|213592479|gb|DB971635.1|DB971635
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|192305913|gb|FG995463.1|FG995463
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|14990868|gb|BI316541.1|BI316541
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCATAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|151409012|gb|EV278820.1|EV278820
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|298179211|gb|HO027682.1|HO027682
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|20814979|gb|BQ299457.1|BQ299457
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|21889395|gb|BQ742608.1|BQ742608
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|21889541|gb|BQ742754.1|BQ742754
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GAGAGAACGGAAGGAGAATTAGGGAACTTACCTCACTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|298164138|gb|HO013783.1|HO013783
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: gi|9564213|gb|BE473722.1|BE473722
EST:     GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCG                         GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT