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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACCAAGTGGGAGGCCTCCAAGTTTTTGTTGACAATGAGTGGCATTCCATTAGCCCAAATTTCAATGCTTTTGTTGTCAACATAGGTGACACCTTCATGgtatgtttgatctctctttgaatgcacctatcttaatttggcaaacaatgatttttcctcgatgatgtttgtttttatcggtaagtgtttgttattaatt...

Basic information

species Glycine max
transcript GLYMA09G27490.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G27490.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0022g02310.t01 (Vitis vinifera), 5'ss of exon 2
AGACCAAGTGGGAGGCCTCCAAGTTTTTGTTGACAATGAGTGGCATTCCATTAGCCCAAATTTCAATGCTTTTGTTGTCAACATAGGTGACACCTTCATGgtatgtttgatctctctttgaatgcacctatcttaatt---------tggcaaacaatgatttttcctcgatgatgtttgtttttatcggtaagtgtttgttattaatt----------------------------------------------------
 ||||||||||| ||||| ||||| ||||| ||  |  | |||   |||||||||||||||||| |||| |||||||| ||||| || |||||||||||||||   |  ||| |  ||| |  |  ||  | ||| ||            |||| || | ||||||    | | | ||  ||||| |   |   |  || || ||  ||                                                    
GGACCAAGTGGGTGGCCTTCAAGTGTTTGTAGATGACAAATGGTGGTCCATTAGCCCAAATTTCGATGCCTTTGTTGTTAACATCGGCGACACCTTCATGgtaacctgaatcacgttttcacagacccacttttagttactgttttgcttcaaaaaaaggtttttcaaaaaaggttttcattttttttcattttttctttttcttttttggtttttagtggttgatcataagtgctttgtggggtttttgccatctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22932821|gb|BU549960.1|BU549960
EST:     TTAGCCCAAATTTCAATGCTTTTGTTGTCAACATAGGTGACACCTTCATG                         GCTCTTTCAAATGGAAGGTACAAGAGTTGCTTGCATAGGGCAGTGGTGAAC
genomic: TTAGCCCAAATTTCAATGCTTTTGTTGTCAACATAGGTGACACCTTCATGgtatgtttga ... tattgtgtagGCTCTTTCAAATGGAAGGTACAAGAGTTGCTTGCATAGGGCAGTGGTGAAC