Sequence
atgc intronic sequence ATGC exonic sequenceGTCACTTGCATTTGGTTGCATGCTGGAGTTGTTCATTTAGCTGCCAACATGTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTGgtatgtttcttttatctgcttatttcaggttatttgaagcaattccatttagtgtgaatttatacacccgaagttaggaaataaaaaacattcaagtttt...
Basic information
species | Glycine max |
transcript | GLYMA09G26610.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G26610.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os09g35730.1 (Oryza sativa), 5'ss of exon 2
GTCACTTGCATTTGGTTGCATGCTGGAGTTGTTCATTTAGCTGCCAACATGTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTGgtatgtttcttttatctgcttatttcaggttatttgaagcaat-----tccatt--tagtgtgaatttatacacccgaagttaggaaataaaaaacattcaagtttt
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ATTAGCTGTATCTGGCTCCATGCTGGCCTAATCCATTTGGTTGTGAACATGCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCGgtaagtttcttac-tatgctgattcagtgtcatttttaactatgagaatacgttcttagtgttaacatatatctttgaatacatgccatctcatagaattt------
upper sequence: GLYMA09G26610.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G157384_T01 (Zea mays), 5'ss of exon 2
GTCACTTGCATTTGGTTGCATGCTGGAGTTGTTCATTTAGCTGCCAACATGTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTGgtatgtttcttttatctgcttatttcaggttatttgaagcaattccatttagtgtgaatttat-acacccgaagttagg--aaataaaaaacattcaagtttt
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ATTAGCTGTATCTGGCTCCATGCTGGCCTAGTTCACTTGGTTGTCAACATGCTAAGCTTGCTCTTCATTGGAATCCGCCTTGAGCAACAATTTGGGTTTGgtaagcttcttacataggcttgtt---ggttcactctgccatcaccacattatttatgtttcccagttttgcaccttgattggatacttgactatccattgtt
upper sequence: GLYMA09G26610.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0100g00640.t01 (Vitis vinifera), 5'ss of exon 2
GTCACTTGCATTTGGTTGCATGCTGGAGTTGTTCATTTAGCTGCCAACATGTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTGgtatgt--ttcttttatct---gcttatttcaggttatttgaagcaattccatttagtgtgaatttatacacccgaagttaggaaataaaaaacattcaagtttt
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GTCACTTGCATCTGGTTACATGCTGGTATCATTCATCTGCTTGTAAACATGTTGAGCTTGGTCTTGATTGGTATTCGACTCGAACAGCAATTTGGTTTTGgtatgtggttctcttgcttttagtgtgttgtcattcaccttaggctgatccgactcccttgcctctggacattgttatcttcccattccatatcatttta-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192306335|gb|FG995115.1|FG995115EST: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTG TGAGGATAGGAATCATTTACTTGTTGTCTGGATTCGGCGGGAGTGTGCTGT
genomic: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTGgtatgtttct ... acattggcagTGAGGATAGGAATCATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCACTTGCATTTGGTTGCATGCTGGAGTTGTTCATTTAGCTGCCAACATGTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTGgtatgtttcttttatctgcttatttcaggttatttgaagcaattccatttagtgtgaatttatacacccgaagttaggaaataaaaaacattcaagtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaataa