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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACTTGCATTTGGTTGCATGCTGGAGTTGTTCATTTAGCTGCCAACATGTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTGgtatgtttcttttatctgcttatttcaggttatttgaagcaattccatttagtgtgaatttatacacccgaagttaggaaataaaaaacattcaagtttt...

Basic information

species Glycine max
transcript GLYMA09G26610.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G26610.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os09g35730.1 (Oryza sativa), 5'ss of exon 2
GTCACTTGCATTTGGTTGCATGCTGGAGTTGTTCATTTAGCTGCCAACATGTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTGgtatgtttcttttatctgcttatttcaggttatttgaagcaat-----tccatt--tagtgtgaatttatacacccgaagttaggaaataaaaaacattcaagtttt
 | |  || || ||| | ||||||||  |  | ||||| | ||  |||||| ||||| |  | || ||||| || ||||||||||| ||||||||||| |||| |||||||   | |||| |||    || ||||  | | ||     | | ||  |||||| ||  ||||     |||   | |  ||   | | | |        
ATTAGCTGTATCTGGCTCCATGCTGGCCTAATCCATTTGGTTGTGAACATGCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCGgtaagtttcttac-tatgctgattcagtgtcatttttaactatgagaatacgttcttagtgttaacatatatctttgaatacatgccatctcatagaattt------

upper sequence: GLYMA09G26610.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G157384_T01 (Zea mays), 5'ss of exon 2
GTCACTTGCATTTGGTTGCATGCTGGAGTTGTTCATTTAGCTGCCAACATGTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTGgtatgtttcttttatctgcttatttcaggttatttgaagcaattccatttagtgtgaatttat-acacccgaagttagg--aaataaaaaacattcaagtttt
 | |  || || ||| | ||||||||  | ||||| || | || ||||||| | ||  || |||||||||| || |||||||| ||||||||||||||||||| | |||||  ||  |||| ||   ||||   |    ||   |||  |  | |   |||   |     | |  | |     |||    ||  || | | ||
ATTAGCTGTATCTGGCTCCATGCTGGCCTAGTTCACTTGGTTGTCAACATGCTAAGCTTGCTCTTCATTGGAATCCGCCTTGAGCAACAATTTGGGTTTGgtaagcttcttacataggcttgtt---ggttcactctgccatcaccacattatttatgtttcccagttttgcaccttgattggatacttgactatccattgtt

upper sequence: GLYMA09G26610.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0100g00640.t01 (Vitis vinifera), 5'ss of exon 2
GTCACTTGCATTTGGTTGCATGCTGGAGTTGTTCATTTAGCTGCCAACATGTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTGgtatgt--ttcttttatct---gcttatttcaggttatttgaagcaattccatttagtgtgaatttatacacccgaagttaggaaataaaaaacattcaagtttt
||||||||||| ||||| ||||||||  |  ||||| |   ||  |||||||||||  ||||||| ||||| ||||| || ||||| |||||||| ||||||||||  |||| ||   |   |  | ||     | |  | | ||   |||   |    ||  | |  |||     |  |    | |  | | ||||  |     
GTCACTTGCATCTGGTTACATGCTGGTATCATTCATCTGCTTGTAAACATGTTGAGCTTGGTCTTGATTGGTATTCGACTCGAACAGCAATTTGGTTTTGgtatgtggttctcttgcttttagtgtgttgtcattcaccttaggctgatccgactcccttgcctctggacattgttatcttcccattccatatcatttta-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306335|gb|FG995115.1|FG995115
EST:     GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTG                         TGAGGATAGGAATCATTTACTTGTTGTCTGGATTCGGCGGGAGTGTGCTGT
genomic: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTGgtatgtttct ... acattggcagTGAGGATAGGAATCATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTGT
EST: gi|120532800|gb|EH260933.1|EH260933
EST:     GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTAAG                         TGAGGATAGGAATCATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTGT
genomic: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAACAATTTGGGTTTGgtatgtttct ... acattggcagTGAGGATAGGAATCATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTGT