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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTATGCTATATCTCTTCCACAACGTGTCAATCCTGCAATGTTGGGTTTGATACTTGACTACTGTCGGTTTCACCAAGTACCAGGGCATTCTAACAAGgtctggaacaatcctactttcatgtgattctttttaccttaattttagggatatatatttttcagtactcatccattatttgaagacttggtgcttgtta...

Basic information

species Glycine max
transcript GLYMA09G25090.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G25090.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g01660.1 (Oryza sativa), 5'ss of exon 3
AACTTATGCTATATCTCTTCCACAACGTGTCAATCCTGCAATGTTGGGTTTGATACTTGACTACTGTCGGTTTCACCAAGTACCAGGGCATTCTAACAAGgtctggaacaatcctactttcat------gtgattctttttaccttaattttagggatatatatttttcagtactcatccattatttgaagacttggtgcttgtta
|| | |||| ||  |||| ||| || | || || ||| |||  ||| ||||||| |||||||| ||||||||||| ||||| |||||||  || |||||||| ||     ||   | |||  |      |  | ||  |||    |  |||      | |   | ||||||    | ||||    ||| |    | |  | |    
AAATCATGCAATTGCTCTCCCAGAAAGAGTTAACCCTACAAGTTTGAGTTTGATTCTTGACTATTGTCGGTTTCATCAAGTCCCAGGGCGCTCAAACAAGgtatgtcgtgatttaagttttgtcttctggcaactccctttttactgctttctctcttctgcttgtttcagg---cgtccacctgttgcaagtatagaccatt---

upper sequence: GLYMA09G25090.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0050g00720.t01 (Vitis vinifera), 5'ss of exon 3
AACTTATGCTATATCTCTTCCACAACGTGTCAATCCTGCAATGTTGGGTTTGATACTTGACTACTGTCGGTTTCACCAAGTACCAGGGCATTCTAACAAGgtctggaacaatcctactttcatgtga-----ttctttttacctta-attttagggatatatatttttcagtactcatcc-attatttgaagacttggtgcttgtta------------------------------------------------------------------------
|| |||||| ||||| ||||||||||| ||||||||||| || ||||| || |||||||| |||||||||||||| ||||||||||| |  || || ||||||||  |   || |  | ||||||||      | |  ||  |||| ||| ||   |   ||||||   | || ||||    |    ||  || | ||     |||                                                                         
AAATTATGCCATATCACTTCCACAACGAGTCAATCCTGCTATCTTGGGCTTAATACTTGATTACTGTCGGTTTCATCAAGTACCAGGTCGCTCAAATAAGgtctgatatgttctt--tctcatgtgaatgccctatgcttgtcttagattctaatcaaggatattt--aactattcattttgtggaatggggattgggactgggttgagatggcaattgcataagataaccaaactgatcagttgaactttatttgaatttaatttttcttttgtctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15203134|gb|BI425902.1|BI425902
EST:     TGATACTTGACTACTGTCGGTTTCACCAAGTACCAGGACATTCTAACAAG                         GAGCGCAAAACTTTTGATGAGAAGTTTATTCGGATGGATACAAAGAAGTTA
genomic: TGATACTTGACTACTGTCGGTTTCACCAAGTACCAGGGCATTCTAACAAGgtctggaaca ... actattgtagGAGCGCAAAACTTTTGATGAGAAGTTTATTCGGATGGATACAAAGAAGTTA