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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTGTGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAGTAATCACTGgtaactactagcctcatcactaagcagctattagaggttgtaaaggtcatgcatgtctcattggaaatcatttttaatatcacttttatttattcattatag

Basic information

species Glycine max
transcript GLYMA09G24470.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24470.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0050g01110.t01 (Vitis vinifera), 5'ss of exon 14
CTTCCTG---TGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAGTAATCACTGgtaactactagcctcatcactaagcagctattagaggtt-gtaaaggtcatgcatgtctcattggaaatcatttttaatatcacttttatttattcattatag
|||  ||   |  | |||||||||||   |||||| ||||     | |||||||  |   ||||||||||||||||| || ||||||||||| |||||||| ||||    |||    ||    |||||  | || |    ||   | |  |  |  |||   ||| |     ||||||||||    || |   | |          
CTTATTGAAATATTGCCATCATATGGAGCAGGAAGAGATG---GAGGTGGAAGGCATGCCAGTCTCATTTTTGGAACAAATCTCACTGATGTCGTAATCACAGgta----ctaataacacttttaagc--ccatcacttttttacacacattttctatggtccatgg---tccatttttaatggggctgtccatcag---------

upper sequence: GLYMA09G24470.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0050g01110.t01 (Vitis vinifera), 5'ss of exon 3
---CTTCCTGTGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAGTAATCACTGgtaactactagcctcatcactaagcagctattagaggttgtaaaggtcatgcatgtctcattgg---aaatcatttt--taatatcacttttatttattcattatag
    ||   ||  | |||||||||||    ||||| ||||     | |||||||  |||||| || ||||||||||| |||||||||||||| ||||| || |||||    ||    ||        | | | |  |     | | | || ||  |||   ||||||   | | ||||||  ||||   ||  ||    |          
CTTATTGAAGTTTTGCCATCATATGGAGTGGGAAGAGATG---GAGGTGGAAGGCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAGgtaa----taataacactttgggactgttgtatgcttgaggataagttatatatgcaccattggctaagaacattttgttaatgggacccttcaccag---------