1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTCTTCTTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTATGGGGAGgtaatattgcccatcttttccaacattgcatgtttcattctctctgatttttaactgattattatttacctttttgccttacatttttccttttcacagt...
species | Glycine max |
transcript | GLYMA09G24440.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTATCATGGAAATGACACCCTATTTGAGTCAACTGGCCTTTATGGGGAG TCATCCGTCCGTAAAGTTGCTCTTCGTACTGGGAAGEST: gi|298171116|gb|HO016148.1|HO016148
genomic: TTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTATGGGGAGgtaatattgc ... gttgtttcagTCATCCGTCCGTAAAGTTGCTCTTCGTACTGGGAAG
EST: TTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTATGGGGAG TCATCCGTCCGTAAAGTTGCCCTTCGTACTGGGAAGEST: gi|298199415|gb|HO042778.1|HO042778
genomic: TTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTATGGGGAGgtaatattgc ... gttgtttcagTCATCCGTCCGTAAAGTTGCTCTTCGTACTGGGAAG
EST: TTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTATGGGGAG TCATCCGTCCGTAAAGTTGCTCTTCGTACTGGGAAGEST: gi|8826769|gb|BE210499.1|BE210499
genomic: TTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTATGGGGAGgtaatattgc ... gttgtttcagTCATCCGTCCGTAAAGTTGCTCTTCGTACTGGGAAG
EST: TTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTATGGGGAG TCATCCGTCCGTAAAGTTGCTCTTCGTACTGGGAAG
genomic: TTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTATGGGGAGgtaatattgc ... gttgtttcagTCATCCGTCCGTAAAGTTGCTCTTCGTACTGGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCTTCTTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTATGGGGAGgtaatattgcccatcttttccaacattgcatgtttcattctctctgatttttaactgattattatttacctttttgccttacatttttccttttcacagt
- - - - - - CATGGA