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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCACAGGCATCTTATTAAGAAGATTACTAGATGATAGAAACTTAATAGGTGTAACTCATATTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtagatttctgaacttgattgtgtctttgatatttagaagattttttatgataatgcttttgcatttttttgtgtgacag

Basic information

species Glycine max
transcript GLYMA09G18490.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G18490.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 1
ACCACAGGCATCTTATTAAGAAGATTACTAGATGATAGAAACTTAATAGGTGTAACTCATATTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgt-----agatttctgaact---tgattgtgtctttgata---tttagaagattttttatgataatgcttt-----tgcatttttttgtgtgacag------
|| || ||  |  | ||  | ||||| || |  |||||||| || | |||||| || ||| |||||||||||||||| ||||||||||| ||||||||||||     |   |  | || |   | | | ||  ||  | |   | |||        | | |   | | |||     || || ||||||| |    |      
ACTACTGGAGTTCTGTTGCGGAGATTGCTGGTGGATAGAAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAGCGTGGCATGAATGAAGgtctgcaatcgtcataaaataaataaatctgcattcaaaaagttatagctagacactcaggtagacgatttcatgctgaatatttttgtatttttgtgctag

upper sequence: GLYMA09G18490.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G01130.1 (Arabidopsis thaliana), 5'ss of exon 7
ACCACAGGCATCTTATTAAGAAGATTACTAGATGATAGAAACTTAATAGGTGTAACTCATATTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtagat----ttctgaacttgattgtgtctttgatatttagaagattttttatgataatgcttttgcatt-tttttgtgtgacag
||||||||||| || || ||| | ||  | |  |||||||| |||| ||| || |||||| |||| || ||||||||||||||||||||||||||||||||||  |    || ||   |  |     || |   | ||      | ||  | |     |  |  |  |||  |||||| |   ||
ACCACAGGCATTTTGTTGAGACGCTTGTTGGTAGATAGAAATTTAAGAGGAGTTACTCATGTTATCGTGGATGAAATTCATGAGCGTGGAATGAATGAAGgtatgtatacttttgctatcaagcagctcctcatttttagcttaacttgatttaggtgtcttactatattacttttgtattttag

upper sequence: GLYMA09G18490.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 7
ACCACAGGCATCTTATTAAGAAGATTACTAGATGATAGAAACTTAATAGGTGTAACTCATATTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtagatttctgaacttgattgtgtctttgatatttagaagattttttatgataa--tgcttttgcatttttttgtgtgacag
|||||||||||||| || ||||||||||| | |||||| || || |  || ||||||||| |||||||||||||||||||||||||||||||||||||||||| | |  || |||||||  | | |||    || ||||||     | ||||    | |  |   |  | ||||  |  |||
ACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGAATTTGAAGGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtaaaatg-tggacttgatgttctgtttttccttgagaagaggaaatgtgatttcttaccatgatacatgtttg-attccag