1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATATCATGGACGAGAATGGAAGCTCAAGCAATGCACCAAAGAACAAGAGAAACCTTCCTGTCTCCGTTTTCTTCAAAGATGCAAGgtacccttatatgttatcaacttatcacctttgtttctttgaggagtagcattatgctagaaagaaatatttgactacaaaatactaatacttggttttatgaatgtgagtgagtgtag
species | Glycine max |
transcript | GLYMA09G15550.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGAACAAGAGAAACCTTCCTGTCTCCGTTTTCTTCAAAGATGCAAG ACATGTTTTCAAGATGGATTCCATTGCTAAGGAGATACTTGGGATTGCATTEST: gi|208060280|gb|GD859954.1|GD859954
genomic: CCAAAGAACAAGAGAAACCTTCCTGTCTCCGTTTTCTTCAAAGATGCAAGgtacccttat ... gtgagtgtagACATGTTTTCAAGATGGATTCCATTGCTAAGGAGATACTTGGGATTGCATT
EST: CCAAAGAACAAGAGAAACCTTCCTGTCTCCGTTTTCTTCAAAGATGCAAG ACATGTTTTCAAGATGGATTCCATTGCTAAGGAGATACTTGGGATTGCATTEST: gi|193376583|gb|FK343172.1|FK343172
genomic: CCAAAGAACAAGAGAAACCTTCCTGTCTCCGTTTTCTTCAAAGATGCAAGgtacccttat ... gtgagtgtagACATGTTTTCAAGATGGATTCCATTGCTAAGGAGATACTTGGGATTGCATT
EST: CCAAAGAACAAGAGAAACCTTCCTGTCTCCGTTTTCTTCAAAGATGCAAG ACATGTTTTCAAGAAATGGATTCCATTGCTAAGGAGATACTTGGGATTGCA
genomic: CCAAAGAACAAGAGAAACCTTCCTGTCTCCGTTTTCTTCAAAGATGCAAGgtacccttat ... gtgagtgtagACATGTTTTCAAG--ATGGATTCCATTGCTAAGGAGATACTTGGGATTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATATCATGGACGAGAATGGAAGCTCAAGCAATGCACCAAAGAACAAGAGAAACCTTCCTGTCTCCGTTTTCTTCAAAGATGCAAGgtacccttatatgttatcaacttatcacctttgtttctttgaggagtagcattatgctagaaagaaatatttgactacaaaatactaatacttggttttatgaatgtgagtgagtgtag
- - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG