1 5' 3' | 2 5' 3' | 3 5' 3' |
TGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAGgtaatgcttctaaactatttatctttcttgttgcattctttgtttaactaactaaagtttctatatgcacttttggaattaagaaacacaagaaagtata...
species | Glycine max |
transcript | GLYMA09G09430.6 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGTEST: gi|254323218|gb|GR840023.1|GR840023
genomic: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGT
EST: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGTEST: gi|23729280|gb|BU762725.1|BU762725
genomic: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGT
EST: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGTEST: gi|15001075|gb|BI321889.1|BI321889
genomic: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGT
EST: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGTEST: gi|9899108|gb|BE608076.1|BE608076
genomic: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGT
EST: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGTEST: gi|22521736|gb|BU080547.1|BU080547
genomic: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGT
EST: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGTEST: gi|254332220|gb|GR843804.1|GR843804
genomic: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGT
EST: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGTEST: gi|6482826|gb|AW202038.1|AW202038
genomic: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGT
EST: TTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGTEST: gi|6482422|gb|AW201683.1|AW201683
genomic: TTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGT
EST: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGT
genomic: CAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAGgtaatgcttctaaactatttatctttcttgttgcattctttgtttaactaactaaagtttctatatgcacttttggaattaagaaacacaagaaagtata
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA