Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTTGTGCCGTTTTGCCAGTAAGAAATCAAAGAGCATTCACTGTCAGTGCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcatttctgctatgtgtatttcgttattttcttcaatgtttgcttggttttacttgtgatattgaatctaattctgctgtgacccacacttgtttcttctgaatttttttttctctttcccttttggttttacag

Basic information

species Glycine max
transcript GLYMA09G08830.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193590846|gb|FK548191.1|FK548191
EST:     CCGGGAAGTACCATAAATCGATATTCAAGAGG                         ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
genomic: CCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: gi|207761416|gb|GD733759.1|GD733759
EST:     AAGTACCATAAATCGATATTCAAGAGG                         ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
genomic: AAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: gi|38193501|gb|CF922707.1|CF922707
EST:     GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGG                         ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
genomic: GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: gi|193339835|gb|FK303222.1|FK303222
EST:     CCGGGAAGTACCATAAATCGATATTCAAGAGG                         ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
genomic: CCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: gi|207794735|gb|GD764822.1|GD764822
EST:     GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGG                         ATTTCAAATGTCTCAA
genomic: GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAA
EST: gi|193702686|gb|FK638726.1|FK638726
EST:     CCGGGAAGTACCATAAATCGATATTCAAGAGG                         ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
genomic: CCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
EST: gi|207713196|gb|GD697180.1|GD697180
EST:     CCGGGAAGTACCATAAATCGATATTCAAGAGG                         ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG
genomic: CCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttacagATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGTTGTGCCGTTTTGCCAGTAAGAAATCAAAGAGCATTCACTGTCAGTGCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcatttctgctatgtgtatttcgttattttcttcaatgtttgcttggttttacttgtgatattgaatctaattctgctgtgacccacacttgtttcttctgaatttttttttctctttcccttttggttttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG